YRC Public Data Repository - Protein Structure Prediction

Protein:	GCR1_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	785 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCR1_YEAST.

Description	E-value	Query Range	Subject Range
GCR1 - Transcriptional activator of genes involved in glycolysis; DNA-binding protein that interacts and fu... GCR1_YEAST - Glycolytic genes transcriptional activator GCR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	0.0	[1..785]	[1..785]
gi\|50309991, gi\|... - gi\|50309991\|ref\|XP_455009.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644144\|emb\|CAH0009... gi\|12381870, gi\|... - gi\|49644144\|emb\|CAH00096.1\| KLLA0E23431p [Kluyveromyces lactis], gi\|12381870\|dbj\|BAB21245.1\| KlGcr1p...	4.0E-46	[490..784]	[455..753]
SLP1_CLOTM, SLAP... - (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein B) (S-layer protein 1), Cell sur...	1.0E-43	[77..678]	[772..1367]
gi\|39592304, gi\|... - gi\|39592304\|emb\|CAE75525.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi\|187020927\|em... gi\|157762282 - gi\|157762282\|ref\|XP_001673483.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]	5.0E-41	[4..717]	[1221..1929]
gi\|37930527, gi\|... - gi\|37930527\|gb\|AAP74661.1\| elicitor-like transglutaminase M81 [Phytophthora infestans], gi\|23505399\|...	3.0E-40	[35..687]	[663..1328]
gi\|44983258, gi\|... - gi\|45190362\|ref\|NP_984616.1\| AEL245Wp [Ashbya gossypii ATCC 10895], gi\|44983258\|gb\|AAS52440.1\| AEL24... gi\|44983258 - gi\|44983258\|gb\|AAS52440.1\| AEL245Wp [Ashbya gossypii ATCC 10895]	6.0E-38	[456..785]	[367..711]
gi\|40217297, gi\|... - gi\|4808164\|emb\|CAB42795.1\| largest subunit of the RNA polymerase II complex [Drosophila guanche], gi...	7.0E-38	[160..672]	[1339..1883]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCTSTSSNF YSIAQYILQS YFKVNVDSLN SLKLVDLIVD QTYPDSLTLR KLNEGATGQP  60
   61 YDYFNTVSRD ADISKCPIFA LTIFFVIRWS HPNPPISIEN FTTVPLLDSN FISLNSNPLL 120
  121 YIQNQNPNSN SSVKVSRSQT FEPSKELIDL VFPWLSYLKQ DMLLID

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [167-420]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTNYKLYSLC ELFEFMGRVA IQDLRYLSQH PLLLPNIVTF ISKFIPELFQ NEEFKGIGSI  60
   61 KNSNNNALNN VTGIETQFLN PSTEEVSQKV DSYFMELSKK LTTENIRLSQ EITQLKADMN 120
  121 SVGNVCNQIL LLQRQLLSGN QAIGSKSENI VSSTGGGILI LDKNSINSNV LSNLVQSIDP 180
  181 NHSKPNGQAQ THQRGPKGQS HAQVQSTNSP ALAPINMFPS LSNSIQPMLG TLAPQPQDIV 240
  241 QKRKLPLPGS IASA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [421-705]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATGSPFSPSP VGESPYSKRF KLDDKPTPSQ TALDSLLTKS ISSPRLPLST LANTAVTESF  60
   61 RSPQQFQHSP DFVVGGSSSS TTENNSKKVN EDSPSSSSKL AERPRLPNND STTSMPESPT 120
  121 EVAGDDVDRE KPPESSKSEP NDNSPESKDP EKNGKNSNPL GTDADKPVPI SNIHNSTEAA 180
  181 NSSGTVTKTA PSFPQSSSKF EIINKKDTKA GPNEAIKYKL SRENKTIWDL YAEWYIGLNG 240
  241 KSSIKKLIEN YGWRRWKVSE DSHFFPTRRI IMDYIETECD RGIKL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [706-785]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRFTNPQQPR EDIRKILVGD LEKFRINNGL TLNSLSLYFR NLTKNNKEIC IFENFKNWNV  60
   61 RSMTEEEKLK YCKRRHNTPS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [674-785]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRWKVSEDSH FFPTRRIIMD YIETECDRGI KLGRFTNPQQ PREDIRKILV GDLEKFRINN  60
   61 GLTLNSLSLY FRNLTKNNKE ICIFENFKNW NVRSMTEEEK LKYCKRRHNT PS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits