YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23099669, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23099669, gi|....

Description	E-value	Query Range	Subject Range
gi\|56380333, gi\|... - gi\|56420491\|ref\|YP_147809.1\| 2-dehydro-3-deoxyphosphogluconate aldolase [Geobacillus kaustophilus HT...	167.0	[0..4]	[209..7]
gi\|23100158, gi\|... - gi\|23100158\|ref\|NP_693624.1\| 2-keto-3-deoxy-6-phospho-gluconate aldolase [Oceanobacillus iheyensis H...	161.0	[0..1]	[210..1]
gi\|75237636, gi\|... - gi\|75237636\|ref\|ZP_00721656.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Escherichia coli... gi\|91213377, gi\|... - gi\|91213377\|ref\|YP_543363.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli UTI89... gi\|218692123, gi... - gi\|218692123\|ref\|YP_002400335.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli E... gi\|226903035, gi... - gi\|237702864\|ref\|ZP_04533345.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia sp. 3_2...	160.0	[0..1]	[210..1]
gi\|227888557, gi... - gi\|227888557\|ref\|ZP_04006362.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli 83... gi\|26111027, gi\|... - gi\|26250596\|ref\|NP_756636.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli CFT07...	160.0	[0..1]	[210..1]
gi\|194438600, gi... - gi\|83585910\|ref\|ZP_00924549.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Escherichia coli... gi\|253326574, gi... - gi\|254290538\|ref\|YP_003056286.1\| hypothetical protein ECD_03722 [Escherichia coli BL21(DE3)], gi\|253... gi\|251787101, gi... - gi\|251787101\|ref\|YP_003001405.1\| hypothetical protein B21_03671 [Escherichia coli BL21], gi\|24237937... gi\|253975689, gi... - gi\|254163788\|ref\|YP_003046896.1\| putative conserved hypothetical protein [Escherichia coli B str. RE...	159.0	[0..1]	[210..1]
gi\|110644175, gi... - gi\|110644175\|ref\|YP_671905.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli 536]...	157.0	[0..1]	[210..1]
gi\|23103814, gi\|... - gi\|67155212\|ref\|ZP_00416840.1\| KDPG and KHG aldolase [Azotobacter vinelandii AvOP], ref\|ZP_00090288.... gi\|67087013, gi\|... - gi\|67155212\|ref\|ZP_00416840.1\| KDPG and KHG aldolase [Azotobacter vinelandii AvOP], gi\|67087013\|gb\|E...	157.0	[0..8]	[210..11]
gi\|108563462, gi... - gi\|108563462\|ref\|YP_627778.1\| 2-keto-3-deoxy-6-phosphogluconate aldolase [Helicobacter pylori HPAG1]...	157.0	[0..2]	[206..4]
gi\|254236101, gi... - gi\|84320130\|ref\|ZP_00968515.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Pseudomonas aeru... gi\|116051127, gi... - gi\|46164061\|ref\|ZP_00204960.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Pseudomonas aeru... gi\|107102680 - gi\|107102680\|ref\|ZP_01366598.1\| hypothetical protein PaerPA_01003745 [Pseudomonas aeruginosa PACS2]	156.0	[0..7]	[210..10]
gi\|152989296, gi... - gi\|94412508\|ref\|ZP_01292425.1\| hypothetical protein PaerP_01005681 [Pseudomonas aeruginosa PA7], gi\|...	156.0	[0..7]	[210..10]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDILKQVEKE KLIAIIRGYD TKETIKIAKA LYEGGIRLLE VTLNSDNALQ TIGALHSELE  60
   61 NDVVIGAGTV LDSESAVLAI KAGAKFIISP TLDIETIKAT KRYGVISIPA AFTPTEILSA 120
  121 QEAGADIVKL FPASSLGPNY VKDVHGPLPH IKLLPTGGVN VENVTEFIQK GAVGVGLGSS 180
  181 LVPNTVNVTD EFLEQVTNNA KQFTSKMKTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.30103
Match:	1wa3A
Description:	Mechanism of the Class I KDPG aldolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2-dehydro-3-deoxy-phosphogluconate aldolase activity	3.5813720580742	bayes_pls_golite062009
4-hydroxy-2-oxoglutarate aldolase activity	3.53781238973744	bayes_pls_golite062009
catalytic activity	3.04075198078553	bayes_pls_golite062009
oxo-acid-lyase activity	1.77399387857103	bayes_pls_golite062009
aldehyde-lyase activity	0.85265356790496	bayes_pls_golite062009
transaldolase activity	0.509911537449121	bayes_pls_golite062009
lyase activity	0.437176828950096	bayes_pls_golite062009
fructose-bisphosphate aldolase activity	0.39039247818141	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	0.11947175216212	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: