YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23097975, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23097975, gi|....

Description	E-value	Query Range	Subject Range
gi\|147919138, gi... - gi\|147919138\|ref\|YP_687129.1\| TetR family transcriptional regulator [uncultured methanogenic archaeo...	130.0	[0..4]	[203..2]
gi\|71838703, gi\|... - gi\|71838703\|ref\|ZP_00678460.1\| regulatory protein, TetR [Pelobacter propionicus DSM 2379], gi\|717407...	125.0	[0..10]	[197..22]
gi\|75702427, gi\|... - gi\|75908702\|ref\|YP_322998.1\| TetR family transcriptional regulator [Anabaena variabilis ATCC 29413],...	125.0	[0..9]	[191..3]
gi\|89897168, gi\|... - gi\|89897168\|ref\|YP_520655.1\| hypothetical protein DSY4422 [Desulfitobacterium hafniense Y51], gi\|893...	124.0	[0..5]	[198..16]
gi\|56964437, gi\|... - gi\|56964437\|ref\|YP_176168.1\| TetR/AcrR family transcriptional regulator [Bacillus clausii KSM-K16], ...	123.0	[0..8]	[200..3]
gi\|25534034 - pir\|\|AG2376 transcription regulator alr4567 [imported] - Nostoc sp. (strain PCC 7120) gi\|17232059, gi\|... - gi\|17232059\|ref\|NP_488607.1\| transcriptional regulator [Nostoc sp. PCC 7120], gi\|17133703\|dbj\|BAB762...	123.0	[0..9]	[191..3]
gi\|89086297, gi\|... - gi\|89098893\|ref\|ZP_01171773.1\| YsiA [Bacillus sp. NRRL B-14911], gi\|89086297\|gb\|EAR65418.1\| YsiA [Ba...	123.0	[0..16]	[202..10]
gi\|68169483, gi\|... - gi\|68206589\|ref\|ZP_00558773.1\| regulatory protein, TetR [Desulfitobacterium hafniense DCB-2], gi\|681...	123.0	[0..5]	[198..9]
gi\|52786733, gi\|... - gi\|52786733\|ref\|YP_092562.1\| YsiA [Bacillus licheniformis ATCC 14580], gi\|52349235\|gb\|AAU41869.1\| Ys...	122.0	[0..16]	[200..10]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPRISDEEK EARREHLLES ALECFSAKGY YASTVDDIVR YSNLSKGSVY NYFKSKEEIF  60
   61 IHLLQKKRQE MVEELTIKLA KIDSPLEKLK YWIREDIPYS LEKKKFMRVH VEFWLYSTDS 120
  121 PEVQHILVER FDDMFGLTKE IIEQGQKLGE IKPDIDAEAA SSMFWSLHDG IWLHAVIGYD 180
  181 EAKLEASIKE MESVLITYLT ANA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.09691
Match:	1vi0A
Description:	Crystal structure of a transcriptional regulator
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	4.29755359385997	bayes_pls_golite062009
DNA binding	3.01268207226307	bayes_pls_golite062009
transcription factor activity	3.00408040212712	bayes_pls_golite062009
nucleic acid binding	2.9430921064275	bayes_pls_golite062009
binding	1.69234246404005	bayes_pls_golite062009
sequence-specific DNA binding	0.46503550280898	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.24108783215685	bayes_pls_golite062009
protein binding	0.111941607625758	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: