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View Structure Prediction Details

Protein: LIP1_ARATH
Organism: Arabidopsis thaliana
Length: 393 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LIP1_ARATH.

Description E-value Query
Range
Subject
Range
gi|114631717 - gi|114631717|ref|XP_001138639.1| PREDICTED: lipase-like, ab-hydrolase domain containing 2 [Pan trogl...
254.0 [0..1] [390..116]

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Predicted Domain #1
Region A:
Residues: [1-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWLLVAVLT SLTIFSALTQ SHLLHGSPVN SLCADLIHPA NYSCTEHSIQ TKDGYILALQ  60
   61 RVASLGPRLQ SGPPVLLQHG LFMAGDVWFL NSPKESLGFI LADHGFDVWV GNVRGTRYSY 120
  121 GHVTLSDTDK EFWDWSWQDL AMYDLAEMIQ YLYSISNSKI FLVGHSQGTI MSFAALTQPH 180
  181 VAEMVEAAAL LCPISYLDHV TAPLVERMVF MHLDQMVVAL GLHQINFRSD MLVKLVDSLC 240
  241 EGHMDCTDFL TSITGTNCCF NASKIEYYLD YEPHPSSVKN IRHLFQMIRK GTFAQYDYGY 300
  301 FKNLRTYGLS KPPEFILSHI PASLPMWMGY GGTDGLADVT DVEHTLAELP SSPELLYLED 360
  361 YGHIDFVLGS SAKEDVYKHM IQFFRAKVKS SSW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.045757
Match: 1hlgA
Description: Gastric lipase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
malate dehydrogenase activity 2.28093794718528 bayes_pls_golite062009
palmitoyl-(protein) hydrolase activity 2.14423515928317 bayes_pls_golite062009
catalytic activity 1.39629727416851 bayes_pls_golite062009
triglyceride lipase activity 1.2959733599348 bayes_pls_golite062009
hydrolase activity 1.2724013236338 bayes_pls_golite062009
sterol esterase activity 1.21262745914703 bayes_pls_golite062009
thiolester hydrolase activity 1.18565704009692 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.985235528680562 bayes_pls_golite062009
lipase activity 0.849473630399459 bayes_pls_golite062009
palmitoyl-CoA hydrolase activity 0.569449673299499 bayes_pls_golite062009
peptidase activity 0.438284049245818 bayes_pls_golite062009
carboxylesterase activity 0.424330502936163 bayes_pls_golite062009
acyl-CoA thioesterase activity 0.35429970866093 bayes_pls_golite062009
binding 0.351031277062254 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.189802865849515 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle