YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20807384
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20807384.

Description	E-value	Query Range	Subject Range
gi\|78043338, gi\|... - gi\|78043338\|ref\|YP_359211.1\| septum site-determining protein MinD [Carboxydothermus hydrogenoformans...	221.0	[0..1]	[263..1]
gi\|68167757, gi\|... - gi\|68208351\|ref\|ZP_00560472.1\| Septum site-determining protein MinD [Desulfitobacterium hafniense DC... gi\|89895920, gi\|... - gi\|89895920\|ref\|YP_519407.1\| hypothetical protein DSY3174 [Desulfitobacterium hafniense Y51], gi\|893...	220.0	[0..1]	[263..1]
gi\|106773985, gi... - gi\|158320789\|ref\|YP_001513296.1\| septum site-determining protein MinD [Alkaliphilus oremlandii OhILA...	219.0	[0..1]	[264..1]
gi\|88925427, gi\|... - gi\|88944916\|ref\|ZP_01148138.1\| Septum site-determining protein MinD [Desulfotomaculum reducens MI-1]...	218.0	[0..1]	[263..1]
gi\|98661598 - gi\|98661598\|dbj\|GAA01387.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	217.0	[0..1]	[263..4]
gi\|56421148, gi\|... - gi\|56421148\|ref\|YP_148466.1\| ATPase involved in chromosome partitioning [Geobacillus kaustophilus HT...	216.0	[0..1]	[263..1]
gi\|115250182, gi... - gi\|126698745\|ref\|YP_001087642.1\| septum site-determining protein (cell division inhibitor) [Clostrid... gi\|255649590 - gi\|255649590\|ref\|ZP_05396492.1\| septum site-determining protein (cell division inhibitor) [Clostridi... gi\|119636343, gi... - gi\|90575365\|ref\|ZP_01231849.1\| hypothetical protein CdifQ_02001125 [Clostridium difficile QCD-32g58]... gi\|255655150 - gi\|255655150\|ref\|ZP_05400559.1\| septum site-determining protein (cell division inhibitor) [Clostridi... gi\|255100164 - gi\|255100164\|ref\|ZP_05329141.1\| septum site-determining protein (cell division inhibitor) [Clostridi... gi\|255306053 - gi\|255306053\|ref\|ZP_05350225.1\| septum site-determining protein (cell division inhibitor) [Clostridi... gi\|255313809 - gi\|255313809\|ref\|ZP_05355392.1\| septum site-determining protein (cell division inhibitor) [Clostridi... gi\|255516490 - gi\|255516490\|ref\|ZP_05384166.1\| septum site-determining protein (cell division inhibitor) [Clostridi... gi\|254974684 - gi\|254974684\|ref\|ZP_05271156.1\| septum site-determining protein (cell division inhibitor) [Clostridi... gi\|255092072 - gi\|255092072\|ref\|ZP_05321550.1\| septum site-determining protein (cell division inhibitor) [Clostridi...	216.0	[0..1]	[264..1]
gi\|28204129, gi\|... - gi\|28211687\|ref\|NP_782631.1\| septum site-determining protein minD [Clostridium tetani E88], gi\|28204...	215.0	[0..1]	[263..1]
gi\|88999671 - gi\|88999671\|emb\|CAJ75591.1\| minD protein [Geobacillus thermoleovorans]	215.0	[0..1]	[263..3]
gi\|25300124 - pir\|\|C84028 septum site-determining protein minD [imported] - Bacillus halodurans (strain C-125) gi\|15615589, gi\|... - gi\|15615589\|ref\|NP_243893.1\| septum site-determining protein [Bacillus halodurans C-125], gi\|1017564...	214.0	[0..1]	[263..1]

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Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEAIVITSG KGGVGKTTTT ANIGTYLAMK GYKVALVDTD IGLRNLDVVM GLENRIVYDI  60
   61 VDVVEGQCRL KQALIRDKRF DTLYLLPAAQ TRDKTAVTPE QMRKLIQDLK EEFDYILVDC 120
  121 PAGIEQGFKN AIAGADRAIV VTTPEVSAVR DADRIIGLLE AAELHNPLLV INRIKMDMVK 180
  181 RGDMMDIEDI IDILAIDLLG VIPDDENIII STNKGEPIVL DEKSLASQAY RNLVERFLDR 240
  241 NVPLINLDVG NGFMDRLRRL FKMA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.09691
Match:	1hyqA
Description:	Cell division regulator MinD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleoside-triphosphatase activity	2.50267116518023	bayes_pls_golite062009
pyrophosphatase activity	2.42957469111629	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.40943522107938	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.40733363368781	bayes_pls_golite062009
binding	1.8576045268999	bayes_pls_golite062009
hydrolase activity	1.10968068468793	bayes_pls_golite062009
catalytic activity	0.458437698837681	bayes_pls_golite062009
protein binding	0.378225828131122	bayes_pls_golite062009
nucleotide binding	0.0601614967638421	bayes_pls_golite062009
purine nucleotide binding	0.0518926528648858	bayes_pls_golite062009
purine ribonucleotide binding	0.0231586743339878	bayes_pls_golite062009
ribonucleotide binding	0.0231035204040646	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: