YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47096011, gi\|...
Organism:	Listeria monocytogenes serotype 1/2a str. F6854
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47096011, gi|....

Description	E-value	Query Range	Subject Range
gi\|5823662, gi\|1... - gi\|5823662\|emb\|CAB53850.1\| putative SSB protein [Listeria phage A118], gi\|16798847\|ref\|NP_463525.1\| ... gi\|157325471, gi... - gi\|66733476\|gb\|AAY53290.1\| gp53 [Listeria phage A006], gi\|157325471\|ref\|YP_001468893.1\| gp53 [Lister...	198.0	[0..1]	[160..1]
gi\|254938251 - gi\|254938251\|ref\|ZP_05269948.1\| hypothetical protein LmonF6_14026 [Listeria monocytogenes F6900] gi\|47097485, gi\|... - gi\|47097485\|ref\|ZP_00235027.1\| single-strand binding protein subfamily [Listeria monocytogenes str. ... gi\|254900924, gi... - gi\|254900924\|ref\|ZP_05260848.1\| hypothetical protein LmonJ_13956 [Listeria monocytogenes J0161], gi\|... gi\|254913862, gi... - gi\|254913862\|ref\|ZP_05263874.1\| hypothetical protein LmonJ2_13736 [Listeria monocytogenes J2818], gi...	196.0	[0..1]	[160..1]
gi\|47019183, gi\|... - gi\|47092406\|ref\|ZP_00230196.1\| single-strand binding protein subfamily [Listeria monocytogenes str. ...	196.0	[0..1]	[160..1]
SSB3_LISIN - Single-stranded DNA-binding protein 3 OS=Listeria innocua GN=ssb3 PE=3 SV=1 SSB3_LISIN - Single-stranded DNA-binding protein 3 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=ssb3 PE=...	194.0	[0..1]	[160..1]
gi\|221086942, gi... - gi\|221086942\|ref\|ZP_03556482.1\| single-strand binding protein [Geobacillus sp. Y412MC61], gi\|2207089... gi\|229497917, gi... - gi\|229497917\|ref\|ZP_04391616.1\| single-strand binding protein [Geobacillus sp. Y412MC52], gi\|2293313... gi\|56381858, gi\|... - gi\|56422016\|ref\|YP_149334.1\| single-strand DNA-binding protein [Geobacillus kaustophilus HTA426], gi...	192.0	[0..1]	[160..1]
gi\|152977672, gi... - gi\|89202800\|ref\|ZP_01181508.1\| Single-strand binding protein [Bacillus cereus subsp. cytotoxis NVH 3...	192.0	[0..1]	[160..1]
SSB_BACCR - Single-stranded DNA-binding protein OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC... gi\|218163689, gi... - gi\|218235732\|ref\|YP_002370248.1\| single-stranded DNA-binding protein [Bacillus cereus B4264], gi\|218... gi\|206970006, gi... - gi\|206970006\|ref\|ZP_03230959.1\| single-stranded DNA-binding protein [Bacillus cereus AH1134], gi\|206...	188.0	[0..1]	[160..1]
gi\|167635123, gi... - gi\|167635123\|ref\|ZP_02393440.1\| single-stranded DNA-binding protein [Bacillus anthracis str. A0442],... gi\|254724131 - gi\|254724131\|ref\|ZP_05185916.1\| single-stranded DNA-binding protein [Bacillus anthracis str. A1055] gi\|229267974, gi... - gi\|229603566\|ref\|YP_002869682.1\| single-stranded DNA-binding protein [Bacillus anthracis str. A0248]... gi\|227005144, gi... - gi\|227818242\|ref\|YP_002818251.1\| single-stranded DNA-binding protein [Bacillus anthracis str. CDC 68... gi\|254755947 - gi\|254755947\|ref\|ZP_05207979.1\| single-stranded DNA-binding protein [Bacillus anthracis str. Vollum] gi\|254735148 - gi\|254735148\|ref\|ZP_05192858.1\| single-stranded DNA-binding protein [Bacillus anthracis str. Western... gi\|49480470, gi\|... - gi\|49480470\|ref\|YP_039463.1\| single-strand DNA-binding protein [Bacillus thuringiensis serovar konku... gi\|49188310, gi\|... - gi\|49188310\|ref\|YP_031563.1\| single-strand DNA-binding protein [Bacillus anthracis str. Sterne], gi\|... gi\|21397955 - ref\|NP_653940.1\| SSB, Single-strand binding protein family [Bacillus anthracis str. A2012] gi\|218540004, gi... - gi\|218906665\|ref\|YP_002454499.1\| single-stranded DNA-binding protein [Bacillus cereus AH820], gi\|218... gi\|217065696, gi... - gi\|217962966\|ref\|YP_002341544.1\| single-stranded DNA-binding protein [Bacillus cereus AH187], gi\|217... gi\|206745990, gi... - gi\|206975896\|ref\|ZP_03236807.1\| single-stranded DNA-binding protein [Bacillus cereus H3081.97], gi\|2... gi\|177655279, gi... - gi\|177655279\|ref\|ZP_02936833.1\| single-stranded DNA-binding protein [Bacillus anthracis str. A0174],...	187.0	[0..1]	[160..1]
gi\|163943153, gi... - gi\|89208000\|ref\|ZP_01186525.1\| Single-strand binding protein [Bacillus weihenstephanensis KBAB4], gi...	185.0	[0..1]	[160..1]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNRVVLVGR LTKDPDLRYT PAGVAVATFT LAVNRTFTNQ NGEREADFIN CVVWRKPAEN  60
   61 VANFLKKGSM AGVDGRVQTR NYEDNDGKRV FVTEVVAESV QFLEPKNNNV EGATSNNYQN 120
  121 KANYSNNNQT SSYRADTSQK SDSFASEGKP IDINEDDLPF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.69897
Match:	1eqqA
Description:	SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	2.26271782657431	bayes_pls_golite062009
binding	2.01819468874386	bayes_pls_golite062009
DNA binding	1.81052012500635	bayes_pls_golite062009
single-stranded DNA binding	1.38758756313423	bayes_pls_golite062009
structure-specific DNA binding	1.30327082958682	bayes_pls_golite062009
transcription regulator activity	0.537716356194117	bayes_pls_golite062009
structural constituent of ribosome	0.0989196136046104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: