YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|41583517, gi\|...
Organism:	Lactobacillus johnsonii NCC 533
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41583517, gi|....

Description	E-value	Query Range	Subject Range
gi\|226819222 - gi\|226819222\|ref\|ZP_03808341.1\| hypothetical protein LgasM_00975 [Lactobacillus gasseri MV-22] gi\|238833970, gi... - gi\|238853398\|ref\|ZP_04643777.1\| conserved hypothetical protein [Lactobacillus gasseri 202-4], gi\|238... gi\|23003600 - gi\|23003600\|ref\|ZP_00047257.1\| COG0327: Uncharacterized conserved protein [Lactobacillus gasseri] gi\|116095330, gi... - gi\|23003600\|ref\|ZP_00047257.1\| hypothetical protein Lgas_03001422 [Lactobacillus gasseri ATCC 33323]...	335.0	[0..1]	[265..1]
gi\|6967292 - gi\|6967292\|emb\|CAB72937.1\| hypothetical protein [Lactobacillus helveticus] gi\|160348632, gi... - gi\|161507643\|ref\|YP_001577597.1\| hypothetical protein lhv_1292 [Lactobacillus helveticus DPC 4571], ...	319.0	[0..1]	[265..1]
gi\|103423206, gi... - gi\|104774125\|ref\|YP_619105.1\| hypothetical protein Ldb1218 [Lactobacillus delbrueckii subsp. bulgari... gi\|116093516, gi... - gi\|116514201\|ref\|YP_813107.1\| hypothetical protein LBUL_1127 [Lactobacillus delbrueckii subsp. bulga...	314.0	[0..1]	[265..1]
gi\|58254790, gi\|... - gi\|58337473\|ref\|YP_194058.1\| hypothetical protein LBA1191 [Lactobacillus acidophilus NCFM], gi\|58254... gi\|227868129, gi... - gi\|227904110\|ref\|ZP_04021915.1\| hypothetical NIF3-like protein [Lactobacillus acidophilus ATCC 4796]...	311.0	[0..1]	[265..1]
gi\|225861441, gi... - gi\|225861441\|ref\|YP_002742950.1\| hypothetical protein SPT_1550 [Streptococcus pneumoniae Taiwan19F-1... gi\|242244826, gi... - gi\|242244826\|ref\|ZP_04799263.1\| protein of hypothetical function DUF34 [Streptococcus pneumoniae TCH... gi\|116517031, gi... - gi\|116517031\|ref\|YP_816891.1\| hypothetical protein SPD_1434 [Streptococcus pneumoniae D39], gi\|11607... gi\|148988662, gi... - gi\|148988662\|ref\|ZP_01820095.1\| hypothetical protein CGSSp6BS73_09059 [Streptococcus pneumoniae SP6-... gi\|25509065 - pir\|\|E98054 conserved hypothetical protein spr1462 [imported] - Streptococcus pneumoniae (strain R6) gi\|15903505, gi\|... - gi\|15903505\|ref\|NP_359055.1\| hypothetical protein spr1462 [Streptococcus pneumoniae R6], gi\|15459119...	300.0	[0..4]	[264..3]
gi\|90961824, gi\|... - gi\|90961824\|ref\|YP_535740.1\| NIF3-related protein [Lactobacillus salivarius UCC118], gi\|90821018\|gb\|...	299.0	[0..1]	[264..1]
gi\|116103009, gi... - gi\|48870728\|ref\|ZP_00323447.1\| COG0327: Uncharacterized conserved protein [Pediococcus pentosaceus A...	298.0	[0..4]	[264..3]
gi\|116098754, gi... - gi\|116333407\|ref\|YP_794934.1\| hypothetical protein LVIS_0760 [Lactobacillus brevis ATCC 367], gi\|116...	294.0	[0..4]	[264..3]
YG09_STRPN, Y160... - (Q97PK0) Hypothetical UPF0135 protein SP1609, UPF0135 protein SP_1609 OS=Streptococcus pneumoniae GN... GCH1L_STRPN - GTP cyclohydrolase 1 type 2 homolog OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TI...	293.0	[0..4]	[264..3]
gi\|24379860, gi\|... - gi\|24379860\|ref\|NP_721815.1\| hypothetical protein SMU.1463c [Streptococcus mutans UA159], gi\|2437783...	291.0	[0..2]	[264..1]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKVADIVAR LKKDFPEEIA SEGDPVGMQI GSMDADVTKV MTTLDVRPQV VDEAIEKGVD  60
   61 LIISHHPVMF RPAKNLDFAD PQNAMYGKLI ANGITVYSIH TNSDKAENGS ADWQAEELGL 120
  121 EEVEPFALDT DGIAIGRKGK LPKKMTAKEF AYYVKDKMQI PMARLITADN DRLISTVAFI 180
  181 CGDGGKFWRQ ALVDGVDAFI TGDVYYHVGH DMISSGLTVV DPGHYTEKLF KYKVGDRLEK 240
  241 WNQDYNWNVP VVISEVSTNP FQDLF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.39794
Match:	2fywA
Description:	No description for 2fywA was found.

Predicted functions:

Term	Confidence	Notes
binding	2.36275821588531	bayes_pls_golite062009
transcription factor binding	0.8197800099048	bayes_pls_golite062009
protein binding	0.188326419539465	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: