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View Structure Prediction Details

Protein: gi|18410372, gi|...
Organism: Arabidopsis thaliana
Length: 576 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18410372, gi|....

Description E-value Query
Range
Subject
Range
gi|31616515, gi|... - gi|42572699|ref|NP_974445.1| LAF3/LAF3 ISF1/LAF3 ISF2 (LONG AFTER FAR-RED 3); hydrolase [Arabidopsis...
327.0 [0..7] [576..14]

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Predicted Domain #1
Region A:
Residues: [1-576]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLFVIVSAA VFLLISVAYL PLLNDLYWST LKSPTPPAGI VADLLVTNGT IFTSDSSLPF  60
   61 ADSMAIRNGR ILKVGSFATL KGFIGDGTME VNLEGKIVVP GLIDSHVHLI SGGLQMAQVG 120
  121 LRGVSQKDEF CKMVKDAVQN AKEGSWILGG GWNNDFWGGE LPSASWIDEI SPRNPVWLIR 180
  181 MDGHMALANS LALKIAGVIS LTEDPVGGTI MRMPSGEPTG LLIDAAMELV TPWVKEISVD 240
  241 ERREALFRAS KYALTRGVTT VIDLGRYFPG TTDELSWKDF QDVYLYADSS KKMMIRTCLF 300
  301 FPITTWSRLL DLKLQKGSVL SEWLYLGGVK AFIDGSLGSN SALFYEEYID TPNNYGLEVM 360
  361 DPEKLSNFTM AADKSGLQVA IHAIGDKAND MILDMYESVA AANGDRDRRF RIEHAQHLAP 420
  421 GSANRFGQLH IVASVQPDHL LDDADSVAKK LGSERAVKES YLFQSLLNGN ALLALGSDWP 480
  481 VADINPLHSI RTAVKRIPPK WDHAWIPSER ISFTDALIAQ TISAARAAFL DHHLGSLSPG 540
  541 KLADFVILST NSWDEFSKDV SASVLATYVG GKQLYP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.69897
Match: 1rjpA
Description: Crystal structure of D-aminoacylase in complex with 100mM CuCl2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 2.89663896697662 bayes_pls_golite062009
catalytic activity 1.70199291046899 bayes_pls_golite062009
peptidase activity 0.531583397695361 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.0416211123846697 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle