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View Structure Prediction Details

Protein: MTPB_ARATH
Organism: Arabidopsis thaliana
Length: 375 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MTPB_ARATH.

Description E-value Query
Range
Subject
Range
gi|54645085, gi|... - gi|54645085|gb|EAL33825.1| GA16530-PA [Drosophila pseudoobscura], gi|125985993|ref|XP_001356760.1| G...
278.0 [0..10] [373..317]

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Predicted Domain #1
Region A:
Residues: [1-375]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELEQICILK PDDEEEMESP SPSKTEENLG VVPLSCAFTR QEHCVSETKE REESTRRLSS  60
   61 LIFLYLIVMS VQIVGGFKAN SLAVMTDAAH LLSDVAGLCV SLLAIKVSSW EANPRNSFGF 120
  121 KRLEVLAAFL SVQLIWLVSG VIIHEAIQRL LSRSREVNGE IMFGISAFGF FMNLVMVLWL 180
  181 GHNHSHHHHD HHHHHHNHKH QHQHHHKEVV AEEEEEEMNP LKGEKSSSKE MNINIQGAYL 240
  241 HAMADMIQSL GVMIGGGIIW VKPKWVLVDL ICTLVFSAFA LAATLPILKN IFGILMERVP 300
  301 RDMDIEKLER GLKRIDGVKI VYDLHVWEIT VGRIVLSCHI LPEPGASPKE IITGVRNFCR 360
  361 KSYGIYHATV QVESE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.69897
Match: 2qfiA
Description: No description for 2qfiA was found.

Predicted functions:

Term Confidence Notes
cation transmembrane transporter activity 6.3253503604398 bayes_pls_golite062009
ion transmembrane transporter activity 6.22189384650962 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 5.82185991246167 bayes_pls_golite062009
transporter activity 4.27173462293249 bayes_pls_golite062009
transmembrane transporter activity 4.18558383943492 bayes_pls_golite062009
substrate-specific transporter activity 3.94511592355578 bayes_pls_golite062009
metal ion transmembrane transporter activity 2.43294134632841 bayes_pls_golite062009
transition metal ion transmembrane transporter activity 2.32644140472297 bayes_pls_golite062009
efflux transmembrane transporter activity 1.98656970252979 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 1.95281540802467 bayes_pls_golite062009
cation channel activity 1.55011961058299 bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity 1.31663166812163 bayes_pls_golite062009
binding 1.02283270169384 bayes_pls_golite062009
ion channel activity 1.01093555209783 bayes_pls_golite062009
passive transmembrane transporter activity 0.963824080292546 bayes_pls_golite062009
channel activity 0.963824080292546 bayes_pls_golite062009
substrate-specific channel activity 0.948079854416241 bayes_pls_golite062009
cadmium ion transmembrane transporter activity 0.661906409169955 bayes_pls_golite062009
active transmembrane transporter activity 0.490905558612378 bayes_pls_golite062009
iron ion transmembrane transporter activity 0.376948884172728 bayes_pls_golite062009
protein binding 0.0921963177320718 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle