YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30725316, gi\|...
Organism:	Arabidopsis thaliana
Length:	521 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30725316, gi|....

Description	E-value	Query Range	Subject Range
gi\|25408713, gi\|... - gi\|2651300\|gb\|AAB87580.1\| putative initiator tRNA phosphoribosyl-transferase [Arabidopsis thaliana],...	734.0	[0..1]	[521..1]
gi\|53792561, gi\|... - gi\|53792561\|dbj\|BAD53550.1\| putative initiator tRNA phosphoribosyl-transferase [Oryza sativa Japonic... gi\|218198379 - gi\|218198379\|gb\|EEC80806.1\| hypothetical protein OsI_23355 [Oryza sativa Indica Group]	652.0	[0..15]	[517..22]
gi\|39946094, gi\|... - gi\|39946094\|ref\|XP_362584.1\| hypothetical protein MGG_08167 [Magnaporthe grisea 70-15], gb\|EAA57198....	570.0	[0..1]	[516..1]
gi\|66851444, gi\|... - gi\|70998158\|ref\|XP_753808.1\| tRNA a64-2'-o-ribosylphosphate transferase [Aspergillus fumigatus Af293...	564.0	[0..5]	[514..17]
gi\|83772284 - gi\|83772284\|dbj\|BAE62414.1\| unnamed protein product [Aspergillus oryzae] gi\|220695605, gi... - gi\|238495438\|ref\|XP_002378955.1\| tRNA a64-2'-o-ribosylphosphate transferase [Aspergillus flavus NRRL... gi\|169778163 - gi\|169778163\|ref\|XP_001823547.1\| hypothetical protein [Aspergillus oryzae RIB40]	557.0	[0..1]	[514..1]
gi\|32404838, gi\|... - gi\|32404838\|ref\|XP_323032.1\| related to 2''-O-ribosyl phosphate transferase RIT1 [MIPS] [Neurospora ... gi\|85103370 - gi\|85103370\|ref\|XP_961506.1\| hypothetical protein NCU03730 [Neurospora crassa OR74A]	551.0	[0..1]	[516..1]
gi\|111055025 - gi\|111055025\|gb\|EAT76145.1\| hypothetical protein SNOG_16447 [Phaeosphaeria nodorum SN15]	541.0	[0..3]	[513..8]
gi\|42550926, gi\|... - gi\|46121505\|ref\|XP_385307.1\| hypothetical protein FG05131.1 [Gibberella zeae PH-1], gi\|42550926\|gb\|E...	531.0	[0..5]	[517..7]
gi\|49642264 - gi\|49642264\|emb\|CAH00226.1\| KLLA0D01386p [Kluyveromyces lactis] gi\|50306313, gi\|... - gi\|50306313\|ref\|XP_453130.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642264\|emb\|CAH0022...	527.0	[0..12]	[513..5]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAKSEEPMM TTRDSIYRAA RNIKRRDNSL YNALRSIYQD SIFVHEISLL WPKLPLVANL  60
   61 RCGLWYSEKF DATCYFKSTD GHTNNLSFNT SRLNLHLPLL AGEKGGCIII DSTRKGKRFP 120
  121 DSMSKTIPMW SCVVNRSIFN HWNRLCNIDA GLTSDDDGDN IRKLLDKWDC SLHLPLWVSN 180
  181 TERASIEARL DEWTRELDES GADIASLASC LRKPLRPLWV SQKTVIWLNE V

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [232-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEHDSWDFTP LILVSASASG ELQNRTSSEF SWNYIPGAGD DEESWARGLS PNVFWTHVDD  60
   61 LIHSGPDLCN QKVAEIVEND RVYRAHRGQE APQVVVKCSK SNGGVNHAKS D

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [343-521]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EILCLSAQIP KVDEERLVFW LSSTNLAVGA SQVACKETSI DCILNCDQNP ISVPVSYLEE  60
   61 HLHLPMKGSK FDRFSISRNL PPAVNFAKLK MSSGKKVLVC CQDGEDISIC VCLAILMSLF 120
  121 NEEGAFDGGK SFEEKSITKM DMRRMLIFIC KYAVNARPSR GNLKQVFGFL SSHRENSDE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.08
Match:	2j17A
Description:	No description for 2j17A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits