Protein: | TYDP1_YEAST |
Organism: | Saccharomyces cerevisiae S288c |
Length: | 544 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TYDP1_YEAST.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..544] | [1..544] |
|
0.0 | [18..536] | [105..589] |
|
0.0 | [71..538] | [135..576] |
|
0.0 | [75..539] | [137..591] |
|
0.0 | [60..533] | [2..514] |
|
0.0 | [74..542] | [28..439] |
|
0.0 | [185..536] | [1..324] |
Region A: Residues: [1-222] |
1 11 21 31 41 51 | | | | | | 1 MSRETNFNGT KRKRSDVAEK VAQRWKSVRY SAEMENMAPV NSNNDSDDCV IVSESKIIDL 60 61 TNQEQDLSER IETNDTAKGA VFKLMKSDFY EREDFMGEVE DMITLKDIFG TETLKRSILF 120 121 SFQYELDFLL RQFHQNVENI TIVGQKGTIM PIEARAMDAT LAVILKKVKL IEITMPPFAS 180 181 HHTKLIINFY DNGECKIFLP SNNFTSMETN LPQQVCWCSP LL |
Detection Method: | |
Confidence: | 289.9897 |
Match: | 1jy1A_ |
Description: | Tyrosyl-DNA phosphodiesterase TDP1 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
3'-tyrosyl-DNA phosphodiesterase activity | 1.46693175347055 | bayes_pls_golite062009 |
tyrosyl-DNA phosphodiesterase activity | 1.46693175347055 | bayes_pls_golite062009 |
structure-specific DNA binding | 1.41591686174898 | bayes_pls_golite062009 |
double-stranded DNA binding | 1.29668490323599 | bayes_pls_golite062009 |
single-stranded DNA binding | 1.29429720882252 | bayes_pls_golite062009 |
catalytic activity | 1.29236214516383 | bayes_pls_golite062009 |
binding | 1.26667168593698 | bayes_pls_golite062009 |
nucleic acid binding | 0.926017334343152 | bayes_pls_golite062009 |
DNA binding | 0.840595330626189 | bayes_pls_golite062009 |
transferase activity, transferring phosphorus-containing groups | 0.235198647671849 | bayes_pls_golite062009 |
protein binding | 0.162885453822356 | bayes_pls_golite062009 |
Region A: Residues: [223-268] |
1 11 21 31 41 51 | | | | | | 1 KIGKEGLPVP FKRSLIEYLN SYHLKDIDEL ITKSVEEVNF APLSEL |
Detection Method: | |
Confidence: | 289.9897 |
Match: | 1jy1A_ |
Description: | Tyrosyl-DNA phosphodiesterase TDP1 |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [269-287] |
1 11 21 31 41 51 | | | | | | 1 EFVYSTPSKF QSSGLLSFY |
Region B: Residues: [461-486] |
1 11 21 31 41 51 | | | | | | 1 YTSANLSQTA WGTVSRKPRN YEAGVL |
Detection Method: | |
Confidence: | 289.9897 |
Match: | 1jy1A_ |
Description: | Tyrosyl-DNA phosphodiesterase TDP1 |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [288-460] |
1 11 21 31 41 51 | | | | | | 1 NKLEKLSAGT SASDTAKHYL CQTSSIGTSL SRARDENLWT HLMIPLFTGI MSPPAKDTAG 60 61 RKKAEILPTN SLINEYSQRK IKPYIIFPTE QEFVTSPLKW SSSGWFHFQY LQKKSYYEML 120 121 RNKFKVFYKQ DPAMVTRRRG TTPAHSKFYM HCATNSAGPC DASQVFKELE WCL |
Region B: Residues: [487-544] |
1 11 21 31 41 51 | | | | | | 1 YHSRRLANTR KVTCRTFTRD RRGCAGNPTH VAVPFTLPVI PYDLAEDECF CLARHEND |
Detection Method: | |
Confidence: | 289.9897 |
Match: | 1jy1A_ |
Description: | Tyrosyl-DNA phosphodiesterase TDP1 |
Matching Structure (courtesy of the PDB): |