| Protein: | RNZ_YEAST |
| Organism: | Saccharomyces cerevisiae S288c |
| Length: | 838 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNZ_YEAST.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..838] | [1..838] |
|
|
0.0 | [4..831] | [106..888] |
|
|
0.0 | [4..826] | [51..784] |
|
|
0.0 | [4..813] | [59..775] |
|
|
0.0 | [4..813] | [59..775] |
|
|
0.0 | [4..813] | [59..775] |
|
Region A: Residues: [1-204] |
1 11 21 31 41 51
| | | | | |
1 MFTFIPITHP TSDTKHPLLL VQSAHGEKYF FGKIGEGSQR SLTENKIRIS KLKDIFLTGE 60
61 LNWSDIGGLP GMILTIADQG KSNLVLHYGN DILNYIVSTW RYFVFRFGID LNDHIMKDKE 120
121 VYKDKIIAVK SFNVLKNGGE DRLGVFDSFQ KGVLRSIVAK MFPKHAPTDR YDPSSDPHLN 180
181 VELPDLDAKV EVSTNYEISF SPVR
|
| Detection Method: |  |
| Confidence: | 1.66 |
| Match: | 1qh5A |
| Description: | Glyoxalase II (hydroxyacylglutathione hydrolase) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.25638799652541 | bayes_pls_golite062009 |
| 3'-tRNA processing endoribonuclease activity | 0.998280249151351 | bayes_pls_golite062009 |
| nucleic acid binding | 0.980281910076056 | bayes_pls_golite062009 |
| catalytic activity | 0.941400907161877 | bayes_pls_golite062009 |
| RNA binding | 0.794779546418275 | bayes_pls_golite062009 |
| protein binding | 0.0732519352239051 | bayes_pls_golite062009 |
|
Region A: Residues: [205-308] |
1 11 21 31 41 51
| | | | | |
1 GKFKVEEAIK LGVPKGPLFA KLTKGQTITL DNGIVVTPEQ VLENERHFAK VLILDIPDDL 60
61 YLNAFVEKFK DYDCAELGMV YYFLGDEVTI NDNLFAFIDI FEKN
|
| Detection Method: | |
| Confidence: | 1.66 |
| Match: | 1qh5A |
| Description: | Glyoxalase II (hydroxyacylglutathione hydrolase) |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.31163219351982 | bayes_pls_golite062009 |
| nucleic acid binding | 0.995499818152009 | bayes_pls_golite062009 |
| catalytic activity | 0.888964130802536 | bayes_pls_golite062009 |
| RNA binding | 0.752641444664237 | bayes_pls_golite062009 |
| 3'-tRNA processing endoribonuclease activity | 0.6076643116915 | bayes_pls_golite062009 |
| protein binding | 0.104060533429009 | bayes_pls_golite062009 |
|
Region A: Residues: [309-456] |
1 11 21 31 41 51
| | | | | |
1 NYGKVNHMIS HNKISPNTIS FFGSALTTLK LKALQVNNYN LPKTDRVFSK DFYDRFDTPL 60
61 SRGTSMCKSQ EEPLNTIIEK DNIHIFSQNK TVTFEPFRMN EEPMKCNING EVADFSWQEI 120
121 FEEHVKPLEF PLADVDTVIN NQLHVDNF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.595 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.339 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.725 | d.82.2 | Frataxin-like |
| View | Download | 0.481 | a.74.1 | Cyclin-like |
| View | Download | 0.321 | b.60.1 | Lipocalins |
| View | Download | 0.489 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.418 | a.19.1 | Fertilization protein |
| View | Download | 0.506 | a.167.1 | Porin chaperone SurA, peptide-binding domain |
| View | Download | 0.352 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.408 | a.1.1 | Globin-like |
| View | Download | 0.399 | a.182.1 | GatB/YqeY domain |
| View | Download | 0.397 | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.370 | a.1.1 | Globin-like |
| View | Download | 0.368 | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.342 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.320 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.316 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.314 | a.74.1 | Cyclin-like |
| View | Download | 0.307 | a.126.1 | Serum albumin-like |
| View | Download | 0.297 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.295 | c.52.3 | Eukaryotic RPB5 N-terminal domain |
| View | Download | 0.286 | d.92.1 | Metalloproteases ("zincins"), catalytic domain |
| View | Download | 0.285 | b.60.1 | Lipocalins |
| View | Download | 0.282 | d.2.1 | Lysozyme-like |
| View | Download | 0.272 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.272 | a.24.11 | Bacterial GAP domain |
| View | Download | 0.271 | a.19.1 | Fertilization protein |
| View | Download | 0.269 | b.60.1 | Lipocalins |
| View | Download | 0.263 | a.5.4 | Elongation factor TFIIS domain 2 |
| View | Download | 0.257 | c.26.1 | Nucleotidylyl transferase |
| View | Download | 0.250 | a.22.1 | Histone-fold |
| View | Download | 0.244 | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.230 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.224 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.217 | c.56.3 | Peptidyl-tRNA hydrolase |
| View | Download | 0.216 | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.206 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.203 | a.126.1 | Serum albumin-like |
| View | Download | 0.203 | b.88.1 | Mss4-like |
|
Region A: Residues: [457-639] |
1 11 21 31 41 51
| | | | | |
1 NNSAEKKKHV EIITLGTGSA LPSKYRNVVS TLVKVPFTDA DGNTINRNIM LDAGENTLGT 60
61 IHRMFSQLAV KSIFQDLKMI YLSHLHADHH LGIISVLNEW YKYNKDDETS YIYVVTPWQY 120
121 HKFVNEWLVL ENKEILKRIK YISCEHFIND SFVRMQTQSV PLAEFNEILK ENSNQESNRK 180
181 LEL
|
| Detection Method: | |
| Confidence: | 4.30103 |
| Match: | 1e5dA_ |
| Description: | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain; Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.25638799652541 | bayes_pls_golite062009 |
| 3'-tRNA processing endoribonuclease activity | 0.998280249151351 | bayes_pls_golite062009 |
| nucleic acid binding | 0.980281910076056 | bayes_pls_golite062009 |
| catalytic activity | 0.941400907161877 | bayes_pls_golite062009 |
| RNA binding | 0.794779546418275 | bayes_pls_golite062009 |
| protein binding | 0.0732519352239051 | bayes_pls_golite062009 |
|
Region A: Residues: [640-838] |
1 11 21 31 41 51
| | | | | |
1 DRDSSYRDVD LIRQMYEDLS IEYFQTCRAI HCDWAYSNSI TFRMDENNEH NTFKVSYSGD 60
61 TRPNIEKFSL EIGYNSDLLI HEATLENQLL EDAVKKKHCT INEAIGVSNK MNARKLILTH 120
121 FSQRYPKLPQ LDNNIDVMAR EFCFAFDSMI VDYEKIGEQQ RIFPLLNKAF VEEKEEEEDV 180
181 DDVESVQDLE VKLKKHKKN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
