| Protein: | gi|6320880|ref|N... |
| Organism: | Saccharomyces cerevisiae S288c |
| Length: | 759 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6320880|ref|N....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..759] | [1..759] |
|
|
2.0E-74 | [1..399] | [1..358] |
|
|
3.0E-72 | [1..409] | [1..333] |
|
|
1.0E-69 | [1..421] | [1..345] |
|
|
1.0E-69 | [1..409] | [1..333] |
|
|
2.0E-68 | [1..387] | [1..348] |
|
|
3.0E-68 | [69..491] | [6..400] |
|
|
4.0E-68 | [1..409] | [1..333] |
|
Region A: Residues: [1-122] |
1 11 21 31 41 51
| | | | | |
1 MGVSQIWEFL KPYLQDSRIP LRKFVIDFNK SQKRAPRIAI DAYGWLFECG FIQNIDISPR 60
61 SRSRSRSPTR SPRDSDIDSS QEYYGSRSYT TTGKAVINFI SRLKELLSLN VEFLLVFDGV 120
121 MK
|
|
Region B: Residues: [139-273] |
1 11 21 31 41 51
| | | | | |
1 DDEKEYYSSW EQHVKNHEVY GNCKGLLAPS DPEFISLVRK LLDLMNISYV IACGEGEAQC 60
61 VWLQVSGAVD FILSNDSDTL VFGGEKILKN YSKFYDDFGP SSITSHSPSR HHDSKESFVT 120
121 VIDLPKINKV AGKKF
|
|
Region C: Residues: [321-371] |
1 11 21 31 41 51
| | | | | |
1 KDFNLEDLTS ESLRKSRYRL FQKRLYLYCK DHSVELFGRN YPVLLNQGSF E
|
| Detection Method: |  |
| Confidence: | 133.512579 |
| Match: | 1b43A_ |
| Description: | Flap endonuclease-1 (Fen-1 nuclease) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nuclease activity | 1.01613710322657 | bayes_pls_golite062009 |
| flap endonuclease activity | 0.82585431543948 | bayes_pls_golite062009 |
| exonuclease activity | 0.824724356048525 | bayes_pls_golite062009 |
| binding | 0.689831953215996 | bayes_pls_golite062009 |
| catalytic activity | 0.608920813710592 | bayes_pls_golite062009 |
| hydrolase activity | 0.474100428865975 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.456180294825256 | bayes_pls_golite062009 |
| 5'-3' exonuclease activity | 0.37506170847971 | bayes_pls_golite062009 |
| endonuclease activity | 0.313338552386604 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 0.261085038325444 | bayes_pls_golite062009 |
| nucleic acid binding | 0.15331824596114 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 0.152177969184321 | bayes_pls_golite062009 |
| DNA binding | 0.0968248862430132 | bayes_pls_golite062009 |
|
Region A: Residues: [123-138] |
1 11 21 31 41 51
| | | | | |
1 PSFKRKFNHE QNATTC
|
|
Region B: Residues: [274-320] |
1 11 21 31 41 51
| | | | | |
1 DRLSLLFFSV LLGADYNRGV KGLGKNKSLQ LAQCEDPNFS MEFYDIF
|
| Detection Method: | |
| Confidence: | 133.512579 |
| Match: | 1b43A_ |
| Description: | Flap endonuclease-1 (Fen-1 nuclease) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [372-759] |
1 11 21 31 41 51
| | | | | |
1 GWPSTVAIMH YFHPIVQPYF DEEVLSDKYI NMAGNGHYRN LNFNELKYFL QSLNLPQISS 60
61 FDKWFHDSMH EMFLLREFLS IDESDNIGKG NMRITEEKIM NIDGGKFQIP CFKIRYTTFL 120
121 PNIPISSQSP LKRSNSPSRS KSPTRRQMDI MEHPNSLWLP KYLIPQSHPL VIQYYETQQL 180
181 IQKEKEKKGK KSNKSRLPQK NNLDEFLRKH TSPIKSIGKV GESRKEILEP VRKRLFVDTD 240
241 EDTSLEEIPA PTRLTTVDEH SDNDDDSLIF VDEITNSQSV LDSSPGKRIR DLTQDEQVDV 300
301 WKDVIEISPI KKSRTTNAEK NPPESGLKSR SSITINARLQ GTKMLPPNLT APRLEREHSS 360
361 VLDQLVTDAQ DTVDRFVACD SDSSSTIE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
