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View Structure Prediction Details

Protein: NADB_ARATH
Organism: Arabidopsis thaliana
Length: 651 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NADB_ARATH.

Description E-value Query
Range		 Subject
Range
gi|32417808, gi|... - gi|32417808|ref|XP_329382.1| hypothetical protein [Neurospora crassa], gi|28927045|gb|EAA36003.1| hy...
gi|85117365 - gi|85117365|ref|XP_965239.1| hypothetical protein [Neurospora crassa OR74A]
 481.0 [0..41] [651..1147]

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Predicted Domain #1
Region A:
Residues: [1-78] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAHVSTGNI HNFYLAGQVY RGQAFSWSSA STFMANPFKE PSWSSGVFKA LKAERCGCYS  60
   61 RGISPISETS KPIRAVSV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.39794
Match: 2qy6A
Description: No description for 2qy6A was found.

Predicted Domain #2
Region A:
Residues: [79-651] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSTKYYDFT VIGSGVAGLR YALEVAKQGT VAVITKDEPH ESNTNYAQGG VSAVLCPLDS  60
   61 VESHMRDTMV AGAHLCDEET VRVVCTEGPE RIRELIAMGA SFDHGEDGNL HLAREGGHSH 120
  121 CRIVHAADMT GREIERALLE AVLNDPNISV FKHHFAIDLL TSQDGLNTVC HGVDTLNIKT 180
  181 NEVVRFISKV TLLASGGAGH IYPSTTNPLV ATGDGMAMAH RAQAVISNME FVQFHPTALA 240
  241 DEGLPIKLQT ARENAFLITE AVRGDGGILY NLGMERFMPV YDERAELAPR DVVARSIDDQ 300
  301 LKKRNEKYVL LDISHKPREK ILAHFPNIAS ECLKHGLDIT RQPIPVVPAA HYMCGGVRAG 360
  361 LQGETNVLGL FVAGEVACTG LHGANRLASN SLLEALVFAR RAVQPSTELM KRTRLDVCAS 420
  421 EKWTRPVVAT ARLLGDEVIA KIIALTKEVR RELQEVMWKY VGIVRSTIRL TTAERKIAEL 480
  481 EAKWETFLFE HGWEQTVVAL EACEMRNLFC CAKLVVSSAL ARHESRGLHY MTDFPFVEES 540
  541 KRIPTIILPS SPTTASWSSR RLQNISSSSL IDC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 118.0
Match: 1chuA
Description: L-aspartate oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
succinate dehydrogenase activity 10.1355816274563 bayes_pls_golite062009
succinate dehydrogenase (ubiquinone) activity 8.87698547678677 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor 8.87698547678677 bayes_pls_golite062009
L-aspartate oxidase activity 7.97437641217089 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors 7.4746833070215 bayes_pls_golite062009
aspartate oxidase activity 7.32727957948448 bayes_pls_golite062009
oxidoreductase activity 6.1068533307878 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 5.74880353813045 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor 5.00880700655468 bayes_pls_golite062009
NADPH-adrenodoxin reductase activity 3.86336671540719 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 2.57282017498189 bayes_pls_golite062009
electron carrier activity 2.50633692682151 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 2.50603438449246 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 2.28982462439281 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 2.26549080531565 bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity 2.16428165652808 bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity 1.91979117253135 bayes_pls_golite062009
catalytic activity 1.75556359035561 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 1.18990628739838 bayes_pls_golite062009
antioxidant activity 1.12347155061135 bayes_pls_golite062009
binding 0.98506692548414 bayes_pls_golite062009
transporter activity 0.890824576391732 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors 0.798505263716232 bayes_pls_golite062009
transmembrane transporter activity 0.706117386114413 bayes_pls_golite062009
ferredoxin reductase activity 0.61713057030514 bayes_pls_golite062009
oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor 0.61713057030514 bayes_pls_golite062009
ferredoxin-NADP+ reductase activity 0.61713057030514 bayes_pls_golite062009
FAD binding 0.503028015880333 bayes_pls_golite062009
substrate-specific transporter activity 0.491481205015383 bayes_pls_golite062009
succinate-CoA ligase activity 0.468246082354334 bayes_pls_golite062009
coenzyme binding 0.44036421821989 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.26114823844682 bayes_pls_golite062009
protein binding 0.159209309982354 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle