YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|24030315, gi|...
Organism: Arabidopsis thaliana
Length: 463 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24030315, gi|....

Description E-value Query
Range
Subject
Range
gi|83361720, gi|... - gi|83368629|ref|ZP_00913491.1| Dihydrolipoamide succinyltransferase [Rhodobacter sphaeroides ATCC 17...
431.0 [0..4] [463..19]

Back

Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMRAVIRRA ASNGSSPSLF AKSLQSSRVA ASSPSLLSGS ETGAYLHRGN HAHSFHNLAL  60
   61 PGNSGISRSA SLVSSTLQRW VRPFSAETG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.522879
Match: 2qf7A
Description: No description for 2qf7A was found.

Predicted Domain #2
Region A:
Residues: [90-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTVEAVVPHM GESITDGTLA TFLKKPGERV QADEAIAQIE TDKVTIDIAS PASGVIQEFL  60
   61 VNEGDTVEPG TKVAIISKSE DTASQVTPSQ KIPETTDTKP SPPAEDKQKP RVESAPVAEK 120
  121 PKAPSSPPPP KQSAKEPQLP PKERERRV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.522879
Match: 1zy8K
Description: The crystal structure of dihydrolipoamide dehydrogenase and dihydrolipoamide dehydrogenase-binding protein (didomain) subcomplex of human pyruvate dehydrogenase complex.
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [238-463]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PMTRLRKRVA TRLKDSQNTF ALLTTFNEVD MTNLMKLRSQ YKDAFYEKHG VKLGLMSGFI  60
   61 KAAVSALQHQ PVVNAVIDGD DIIYRDYVDI SIAVGTSKGL VVPVIRGADK MNFAEIEKTI 120
  121 NSLAKKANEG TISIDEMAGG SFTVSNGGVY GSLISTPIIN PPQSAILGMH SIVSRPMVVG 180
  181 GSVVPRPMMY VALTYDHRLI DGREAVYFLR RVKDVVEDPQ RLLLDI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 88.522879
Match: 1c4tA
Description: Dihydrolipoamide succinyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
S-succinyltransferase activity 10.0778678835755 bayes_pls_golite062009
dihydrolipoyllysine-residue succinyltransferase activity 10.0778678835755 bayes_pls_golite062009
dihydrolipoyllysine-residue acetyltransferase activity 9.65061123545754 bayes_pls_golite062009
dihydrolipoamide S-acyltransferase activity 9.64995677986911 bayes_pls_golite062009
S-acetyltransferase activity 9.49696044977584 bayes_pls_golite062009
S-acyltransferase activity 8.45313874919036 bayes_pls_golite062009
pyruvate dehydrogenase activity 8.17557182322815 bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups 6.86215901871647 bayes_pls_golite062009
acyltransferase activity 6.83977352892719 bayes_pls_golite062009
succinyltransferase activity 6.58826720904067 bayes_pls_golite062009
pyruvate dehydrogenase (acetyl-transferring) activity 6.40483178382327 bayes_pls_golite062009
acetyltransferase activity 6.08159176722072 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor 5.93985773477717 bayes_pls_golite062009
transferase activity, transferring acyl groups 4.60481199262496 bayes_pls_golite062009
carnitine O-acyltransferase activity 2.87366177129153 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors 2.54513901872655 bayes_pls_golite062009
catalytic activity 1.51562638409295 bayes_pls_golite062009
O-acyltransferase activity 1.33852311685118 bayes_pls_golite062009
O-palmitoyltransferase activity 1.22729402619659 bayes_pls_golite062009
carnitine O-palmitoyltransferase activity 1.22729402619659 bayes_pls_golite062009
transferase activity 1.08341671157927 bayes_pls_golite062009
carnitine O-acetyltransferase activity 1.00868366840715 bayes_pls_golite062009
binding 0.801074244553007 bayes_pls_golite062009
O-acetyltransferase activity 0.1424856707148 bayes_pls_golite062009
protein binding 0.00454070917775817 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle