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View Structure Prediction Details

Protein: DR102_ARATH
Organism: Arabidopsis thaliana
Length: 310 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DR102_ARATH.

Description E-value Query
Range
Subject
Range
gi|84468444 - gi|84468444|dbj|BAE71305.1| putative DNA-damage-repair/toleration protein DRT102 [Trifolium pratense...
297.0 [0..6] [309..2]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAVSAVDQ PLKIITGADD FGASLKDAMV THLRSLGIDV EDTGVSSYYS AGSEVGRRVS  60
   61 ASSSSEVRGL VCCGTGVGVA MFANKFPGVY AATCLSVEDA VNARSISNCN VLAFSGIKTS 120
  121 PETALEIFDA WIKTPFKSPC PASGSEPWSS VISSFLDNSL SEMSQIGKS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.09691
Match: 1nn4A
Description: Alternate ribose 5-phosphate isomerase B, RpiB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ribose-5-phosphate isomerase activity 5.69997185547565 bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses 4.04314332668154 bayes_pls_golite062009
intramolecular oxidoreductase activity 3.57097659815257 bayes_pls_golite062009
isomerase activity 2.42530141345385 bayes_pls_golite062009
catalytic activity 2.21687627610124 bayes_pls_golite062009
allose 6-phosphate isomerase activity 2.20293230847792 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [170-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAGDSTTKKI DETTASCVIC CLAKNREFTP VDIMPGGSMK IVRETPTSAI VRFKAGSVEP  60
   61 AHHHTFGHDL VVIKGKKSVW NLSKKERADL VDGDYLFTPA GDVHRVKYHE DTEFFITWDG 120
  121 HWDIFLDEDL ETAKKAIEEE A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.69897
Match: 2f4pA
Description: Crystal structure of hypothetical protein (tm1010) from THERMOTOGA MARITIMA at 1.90 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
intramolecular oxidoreductase activity, interconverting aldoses and ketoses 0.92873878943528 bayes_pls_golite062009
catalytic activity 0.77242843392921 bayes_pls_golite062009
intramolecular oxidoreductase activity 0.46967672268489 bayes_pls_golite062009
3-hydroxyanthranilate 3,4-dioxygenase activity 0.13502301682218 bayes_pls_golite062009
isomerase activity 0.02840080734269 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle