YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23613818, gi\|...
Organism:	Plasmodium falciparum 3D7
Length:	915 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23613818, gi|....

Description	E-value	Query Range	Subject Range
gi\|40745909, gi\|... - gi\|67522887\|ref\|XP_659504.1\| hypothetical protein AN1900.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	468.0	[0..541]	[913..330]
gi\|46135893, gi\|... - gi\|46135893\|ref\|XP_389638.1\| hypothetical protein FG09462.1 [Gibberella zeae PH-1], gi\|42553507\|gb\|E...	465.0	[0..539]	[904..326]
gi\|46227979 - gi\|46227979\|gb\|EAK88899.1\| C- terminal region conserved, zinc finger, myb DNA binding domain [Crypto... gi\|66358710 - gi\|66358710\|ref\|XP_626533.1\| C- terminal region conserved, zinc finger, myb DNA binding domain [Cryp...	454.0	[0..255]	[907..91]
gi\|67622075 - gi\|67622075\|ref\|XP_667794.1\| hypothetical protein [Cryptosporidium hominis TU502] gi\|54658962 - gi\|54658962\|gb\|EAL37567.1\| hypothetical protein Chro.20367 [Cryptosporidium hominis]	441.0	[0..256]	[907..80]
gi\|145013884, gi... - gi\|39968817\|ref\|XP_365799.1\| hypothetical protein MGG_02501 [Magnaporthe grisea 70-15], gb\|EAA54516....	423.0	[0..607]	[913..407]
gi\|32406919, gi\|... - gi\|32406919\|ref\|XP_324070.1\| hypothetical protein [Neurospora crassa], gi\|28921728\|gb\|EAA31008.1\| co... gi\|85096352 - gi\|85096352\|ref\|XP_960244.1\| hypothetical protein NCU04713 [Neurospora crassa OR74A]	391.0	[0..594]	[914..428]
YNS9_SCHPO - Uncharacterized protein C18H10.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18H1... SPBC18H10.09 - zinc finger protein, zf-CHY type	380.0	[0..499]	[905..38]
ctg02_4\|15295\|Zinc - finger protein, putative gi\|159117751, gi... - gi\|71079479\|ref\|XP_778822.1\| hypothetical protein GLP_68_37985_35016 [Giardia lamblia ATCC 50803], g... GL50803_15295 - \| organism=Giardia_Assemblage_A_isolate_WB \| product=Zinc finger domain protein \| location=GLCHR01:1...	327.0	[0..600]	[915..659]
gi\|19069682, gi\|... - gi\|19074957\|ref\|NP_586463.1\| putative zinc finger protein [Encephalitozoon cuniculi GB-M1], gi\|19069... gi\|19074957 - gi\|19074957\|ref\|NP_586463.1\| putative zinc finger protein [Encephalitozoon cuniculi GB-M1]	326.0	[0..580]	[901..75]
gi\|56525576 - gi\|56525576\|emb\|CAH81127.1\| conserved hypothetical protein [Plasmodium chabaudi chabaudi] gi\|70952230 - gi\|70952230\|ref\|XP_745297.1\| hypothetical protein [Plasmodium chabaudi chabaudi]	314.0	[0..163]	[914..3]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEKGNNLCE VDKKKNIYKE NNSNNNNMNS NNNMNNNNNM NSNNNMNSNN NNNNNIYNNI  60
   61 NIFSEKASFS CIKNYDEHVT NYLKKGKLFY GKMKNKETQN ENAHEGDIES REKYDIKKIT 120
  121 KNVNNMSNHD KKNDQVLNNN NIKENINNIN NNNNNNNNNN SYHCKNELIT RKRNVYMSNR 180
  181 FKNNNNNNNN NNSSSNNPFD NLSSRNYKNV YNTCPKSNLI KKESHMNDKF NIHKNILNN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [240-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HIDTYTNNED STNKDYDDKQ SDSIIKNNYN NRNIYNKFYN NNLNNNYVNY NEKKYMCQSN  60
   61 NIYMKYKKNH FYKNYDDEKL LNRNFKKNSQ AYRGYQKVPN YLKESNNLHM QDKSEPFVKE 120
  121 ENKNMENEIV NMDKYENDFL KLKED

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [385-495]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMKDTNDLSF KREDNNNNNM DGENIDIKKN MSDKINDKIN ENINDITNDK INDKINDITN  60
   61 DKINDKINEN INDAVNNVVS EDKELNSDKQ SDKYISDELK RIKREEEKKK V

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.371	a.81.1	N-terminal domain of DnaB helicase
View	Download	0.362	a.39.2	Insect pheromon/odorant-binding proteins

Predicted Domain #4

Region A:
Residues: [496-533]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWKSEEQTL LEEGLRIYKN LKNCPEKWTK ISAVVKTR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.0
Match:	2cqrA
Description:	Solution structure of RSGI RUH-043, a myb DNA-binding domain in human cDNA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.334577365229545	bayes_pls_golite062009
transcription regulator activity	0.0696342306231097	bayes_pls_golite062009

Predicted Domain #5

Region A:
Residues: [534-609]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TADDCLKRFL YCRAVVLKEK KKLKEVTEQK NEKGKEKEET IIKQGTEDLK NSKNEINNDD  60
   61 IKDDEEHEQD IDSDDM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [610-785]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NINNNMNIKG KSLLLNNVHL KNISLYKAVL LKLQLICNRC CNTFDVTSTS KEACQIICTC  60
   61 VNCSNSAVVE VYRNICFMEN TCVCILKFNQ CSLMDLLTAD YSVNCESCGR KNLFKNVTSG 120
  121 KEINVNCQKC FSKLEFKYKD ISFDEPINAN NESLKKIDDM INKLFTKKKS TKKAVP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.02
Match:	2dktA
Description:	No description for 2dktA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.0553342906809291	bayes_pls_golite062009

Predicted Domain #7

Region A:
Residues: [786-915]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TASNNLKIEK TKNMIKINNI EVKDGACKHF KKSHRLFKFP CCNKIFPCPT CHDLNSNHEC  60
   61 DIAKRVICGF CYREFSDDEV CICQRDKKLK KGGKFWEGGK GCRNAITLSR NDSKKYKLLN 120
  121 RQSVQKKKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.221849
Match:	2dktA
Description:	No description for 2dktA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: