| Protein: | LRP6A_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 422 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LRP6A_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
272.0 | [0..30] | [422..129] |
|
Region A: Residues: [1-85] |
1 11 21 31 41 51
| | | | | |
1 MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS 60
61 EIPNLSPSDD DFDHERNSGE DRDQD
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [86-286] |
1 11 21 31 41 51
| | | | | |
1 HGENPVETDG VVVPIDELNQ KIIRQVEYYF SDENLPTDKF LLNAMKRNKK GFVPISTIAT 60
61 FHKMKKLTRD HALIVSALKE SSFLVVSADE KKVKRLSPLP EIRDPKIFTV LVENLPEDHS 120
121 NENIREIFGK AGSIKSVSIC DPNAVEESEK GGKKENFIRT RLHAFVEYET VEAAEKAAAT 180
181 LNNEQDWRNG LRVKLLEQAA G
|
| Detection Method: | |
| Confidence: | 39.39794 |
| Match: | 1po6A |
| Description: | Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.46119712758726 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| mRNA binding | 3.05425904007847 | bayes_pls_golite062009 |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| 1.52879236550095 | bayes_pls_golite062009 | |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.852368751354665 | bayes_pls_golite062009 |
| ligase activity | 0.633198446266208 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.56829350502235 | bayes_pls_golite062009 |
| protein binding | 0.42571879933058 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
|
Region A: Residues: [287-422] |
1 11 21 31 41 51
| | | | | |
1 KFAQRRPARR EVDKEKDTTG RVHDQTGGEK NKKTREHQNH RLHHSDNPAD DDGGNHQKDK 60
61 NGNKGRVVGQ GRRQNHQGGN GIGHGTASSS SHPNYHPVEV SKRPPGPRMP DGTRGFTMGR 120
121 GKAIPPPTST QTSHEV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
