| Protein: | PDF2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 743 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDF2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
993.0 | [0..6] | [743..1] |
|
Region A: Residues: [1-130] |
1 11 21 31 41 51
| | | | | |
1 MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP 60
61 NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN LEPLQVKFWF QNKRTQMKAQ 120
121 SERHENQILK
|
| Detection Method: |  |
| Confidence: | 19.522879 |
| Match: | 1fjlA |
| Description: | Paired protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.334577365229545 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0696342306231097 | bayes_pls_golite062009 |
|
Region A: Residues: [131-220] |
1 11 21 31 41 51
| | | | | |
1 SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA 60
61 KYVGKPLGSS FAPLAIHAPS RSLDLEVGNF
|
| Detection Method: | |
| Confidence: | 1.21 |
| Match: | 2gd7A |
| Description: | No description for 2gd7A was found. |
|
Region A: Residues: [221-355] |
1 11 21 31 41 51
| | | | | |
1 GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV 60
61 EILNEEEYFR TFPRGIGPKP LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS 120
121 RALTLEVLST GVAGN
|
| Detection Method: | |
| Confidence: | 4.522879 |
| Match: | 1khuA |
| Description: | Smad1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [356-513] |
1 11 21 31 41 51
| | | | | |
1 YNGALQVMTA EFQVPSPLVP TRENYFVRYC KQHSDGSWAV VDVSLDSLRP STPILRTRRR 60
61 PSGCLIQELP NGYSKVTWIE HMEVDDRSVH NMYKPLVQSG LAFGAKRWVA TLERQCERLA 120
121 SSMASNIPGD LSVITSPEGR KSMLKLAERM VMSFCSGV
|
| Detection Method: | |
| Confidence: | 1.7 |
| Match: | 2r55A |
| Description: | No description for 2r55A was found. |
|
Region A: Residues: [514-743] |
1 11 21 31 41 51
| | | | | |
1 GASTAHAWTT MSTTGSDDVR VMTRKSMDDP GRPPGIVLSA ATSFWIPVAP KRVFDFLRDE 60
61 NSRKEWDILS NGGMVQEMAH IANGHEPGNC VSLLRVNSGN SSQSNMLILQ ESCTDASGSY 120
121 VIYAPVDIVA MNVVLSGGDP DYVALLPSGF AILPDGSVGG GDGNQHQEMV STTSSGSCGG 180
181 SLLTVAFQIL VDSVPTAKLS LGSVATVNSL IKCTVERIKA AVSCDVGGGA
|
| Detection Method: | |
| Confidence: | 1.12 |
| Match: | 2ns9A |
| Description: | No description for 2ns9A was found. |
