YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ATCA7_ARATH
Organism: Arabidopsis thaliana
Length: 275 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATCA7_ARATH.

Description E-value Query
Range
Subject
Range
gi|25407021, gi|... - gi|8778838|gb|AAF79837.1|AC026875_17 T6D22.16 [Arabidopsis thaliana], pir||E86215 protein T6D22.16 [...
329.0 [0..1] [275..1]

Back

Predicted Domain #1
Region A:
Residues: [1-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNYSSISCI FFVALFSIFT IVSISSAASS HGEVEDEREF NYKKNDEKGP ERWGELKPEW  60
   61 EMCGKGEMQS PIDLMNERVN IVSHLGRLNR DYNPSNATLK NRGHDIMLKF EDGAGTIKIN 120
  121 GFEYELQQLH WHSPSEHTIN GRRFALELHM VHEGRNRRMA VVTVLYKIGR ADTFIRSLEK 180
  181 ELEGIAEMEE AEKNVGMIDP TKIKIGSRKY YRYTGSLTTP PCTQNVTWSV VRKVRTVTRK 240
  241 QVKLLRVAVH DDANSNARPV QPTNKRIVHL YRPIV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 67.39794
Match: 1kopA
Description: Carbonic anhydrase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
carbonate dehydratase activity 2.35405414226159 bayes_pls_golite062009
zinc ion binding 1.2395720116639 bayes_pls_golite062009
catalytic activity 0.97285738666961 bayes_pls_golite062009
binding 0.968862230841214 bayes_pls_golite062009
transition metal ion binding 0.36067052386032 bayes_pls_golite062009
protein binding 0.153910135043582 bayes_pls_golite062009
carbon-oxygen lyase activity 0.0641135521348118 bayes_pls_golite062009
hydro-lyase activity 0.0479238316186823 bayes_pls_golite062009
lyase activity 0.0337150119314038 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle