YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|28394005, gi|...
Organism: Arabidopsis thaliana
Length: 704 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28394005, gi|....

Description E-value Query
Range
Subject
Range
gi|15221773, gi|... - gi|24111439|gb|AAN46888.1| At1g18460/F15H18_15 [Arabidopsis thaliana], gi|20856732|gb|AAM26682.1| At...
688.0 [0..1] [675..1]

Back

Predicted Domain #1
Region A:
Residues: [1-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRIVDNALA VTKESVKTVT YESLNNIARC INGVSALLLT LLPGKANILE GLHGWELRPT  60
   61 FRGPRLPRWM HNGVSSFNEF IHELSVDSDT SSLEYSSGED SDGPLPPSPS SQSSRLSWAS 120
  121 TSASSENHWT EWITFILWWL MFPVRILLWI PQYIISLFYK RSSRIPASPR RHQHSSRPRI 180
  181 SKTNSSKDHD 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [191-304]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPNRTTDRRR GVIEDLHLAI EIGIEAIFDF FHKATHLLLS PSEAFAILLS WFSSSSRSPK  60
   61 ENHGEVAYDE TVQTATLGDT DPSPTERPVE SPTRLYNSMN TDTRTCQDVI TELG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.0
Match: 2qzpA
Description: No description for 2qzpA was found.

Predicted Domain #3
Region A:
Residues: [305-704]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPYEAIRVIT SDGYVLVLER IPRRDARKAV FLQHGVLDSS MGWVSNGVVG SPAFAAYDQG  60
   61 YDVFLGNFRG LVSRDHVNKN ISSKEFWRYS INEHGTEDIP AMIEKIHEIK TTELKLCQPN 120
  121 IDEEINQEEP YKLCAICHSL GGAAILMYVI TRKIKEKPHR LSRLILLSPA GFHEDSNLGF 180
  181 TIVEYIFLFI SPVLARIVPA FYIPTRFFRM LLNKLARDFH NYPALGGLVQ TLMSYVVGGD 240
  241 SSNWVGVLGL PHYNMNDMPA VSFRVAQHLA QIKHTGKFRM YDYGSRSANM EVYGSPEPLD 300
  301 LGESYKFIDV PVDLVAGRND KVIRSSMVKK HYNVMRDAEV DVSFNEFEYA HLDFTFSHRE 360
  361 ELLRYVMSRL LLVKQTPVQQ RQTSQKGMKL KKKKKEGTVV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.0
Match: 1hlgA
Description: Gastric lipase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 3.20549979663539 bayes_pls_golite062009
malate dehydrogenase activity 2.28093794718528 bayes_pls_golite062009
palmitoyl-(protein) hydrolase activity 2.14423515928317 bayes_pls_golite062009
palmitoyl-CoA hydrolase activity 1.62335985481548 bayes_pls_golite062009
catalytic activity 1.39629727416851 bayes_pls_golite062009
triglyceride lipase activity 1.2959733599348 bayes_pls_golite062009
sterol esterase activity 1.21262745914703 bayes_pls_golite062009
thiolester hydrolase activity 1.18565704009692 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.985235528680562 bayes_pls_golite062009
peptidase activity 0.858311047004898 bayes_pls_golite062009
lipase activity 0.849473630399459 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.590445773074315 bayes_pls_golite062009
carboxylesterase activity 0.424330502936163 bayes_pls_golite062009
acyl-CoA thioesterase activity 0.35429970866093 bayes_pls_golite062009
binding 0.351031277062254 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle