YRC Public Data Repository - Protein Structure Prediction

Protein:	SC61B_YARLI
Organism:	Yarrowia lipolytica CLIB122
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SC61B_YARLI.

Description	E-value	Query Range	Subject Range
gi\|44981710 - gi\|44981710\|gb\|AAS51460.1\| ACR234Cp [Ashbya gossypii ATCC 10895] gi\|44981710, gi\|... - gi\|45185920\|ref\|NP_983636.1\| ACR234Cp [Ashbya gossypii ATCC 10895], gi\|44981710\|gb\|AAS51460.1\| ACR23...	114.0	[0..1]	[90..1]
SC61B_KLULA - Protein transport protein Sec61 subunit beta OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / ... SC61B_KLULA, S61... - Protein transport protein Sec61 subunit beta OS=Kluyveromyces lactis GN=SBH1 PE=3 SV=1, (Q8J2P4) Pro...	108.0	[0..5]	[90..3]
SC6B2_YEAST - Protein transport protein SBH2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBH2 PE=1... SBH2 - Ssh1p-Sss1p-Sbh2p complex component, involved in protein translocation into the endoplasmic reticulu... ORFP:6100 - YER019C-A, Contig c425 46829-47095 reverse complement gi\|190405581 - gi\|190405581\|gb\|EDV08848.1\| protein transport protein SEC61 beta 2 subunit [Saccharomyces cerevisiae... gi\|151944729 - gi\|151944729\|gb\|EDN62988.1\| conserved protein [Saccharomyces cerevisiae YJM789]	106.0	[0..3]	[89..2]
gi\|109131069 - gi\|109131069\|ref\|XP_001102187.1\| PREDICTED: Sec61 beta subunit [Macaca mulatta]	101.0	[0..2]	[87..10]
gi\|109476493, gi... - gi\|27714473\|ref\|XP_216400.1\| PREDICTED: similar to Protein transport protein Sec61 beta subunit [Rat...	101.0	[0..2]	[87..10]
SC61B_PONAB - Protein transport protein Sec61 subunit beta OS=Pongo abelii GN=SEC61B PE=3 SV=3 ENSPTRT00000039176 - null tr\|G3H7H4\|G3H7H4... - Protein transport protein Sec61 subunit beta OS=Cricetulus griseus GN=I79_006305 PE=4 SV=1 CCDS6741.1_1 - null SC61B_PONPY - Protein transport protein Sec61 subunit beta - Pongo pygmaeus (Orangutan) SEC61B - Sec61 beta subunit SC61B_CANLF - Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris GN=SEC61B PE=1 SV=2 gi\|149740327 - gi\|149740327\|ref\|XP_001504106.1\| PREDICTED: similar to protein translocation complex beta subunit [E... gi\|109110979 - gi\|109110979\|ref\|XP_001109722.1\| PREDICTED: Sec61 beta subunit [Macaca mulatta] ENSCJAT00000021945 - null	100.0	[0..2]	[87..10]
gi\|84202411, gi\|... - gi\|84202411\|gb\|AAI11653.1\| Sec61 beta subunit [Bos taurus], gi\|115497008\|ref\|NP_001068760.1\| Sec61 b...	100.0	[0..2]	[87..10]
gi\|18000273 - gi\|18000273\|gb\|AAL54898.1\|AF159543_1 transport protein Sec61 beta subunit [Lapemis hardwickii]	100.0	[0..2]	[87..10]
gi\|49524251 - gi\|49524251\|emb\|CAG57842.1\| unnamed protein product [Candida glabrata] gi\|50285041, gi\|... - gi\|50285041\|ref\|XP_444949.1\| hypothetical protein CAGL0A04191g [Candida glabrata CBS138], gi\|4952425...	100.0	[0..3]	[90..2]
SC61B_MOUSE - Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3 gi\|51980602 - gb\|AAH82171.1\| Unknown (protein for MGC:98571) [Xenopus laevis]	100.0	[0..2]	[87..10]

Back

Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSAQVPGG PAAQMKRRNN AQRQEAKASQ RPTSTRSVGA GGSSSTMLKL YTDESQGLKV  60
   61 DPVVVMVLSL GFIFSVVALH ILAKVSTKLL G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.252	d.110.4	SNARE-like
View	Download	0.205	a.47.2	t-snare proteins
View	Download	0.241	a.118.8	TPR-like
View	Download	0.236	d.130.1	S-adenosylmethionine synthetase

Predicted functions:

Term	Confidence	Notes
signal recognition particle binding	2.95505619670326	bayes_pls_golite062009
ribonucleoprotein binding	2.22016171942506	bayes_pls_golite062009
transporter activity	1.45141362740696	bayes_pls_golite062009
binding	1.11882914670932	bayes_pls_golite062009
protein transporter activity	1.04187773839372	bayes_pls_golite062009
protein binding	0.921815813786072	bayes_pls_golite062009
substrate-specific transporter activity	0.897914093688297	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.180368214285052	bayes_pls_golite062009
pyrophosphatase activity	0.143940836293489	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.135270049620812	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.132655147655206	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: