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View Structure Prediction Details

Protein: gi|241881283, gi...
Organism: Desulfovibrio vulgaris RCH1
Length: 776 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|241881283, gi....

Description E-value Query
Range
Subject
Range
gi|76809374, gi|... - gi|76809374|ref|YP_332525.1| ATP-dependent Clp protease ATP-binding subunit clpA [Burkholderia pseud...
0.0 [1..763] [119..884]
gi|120602576, gi... - gi|120602576|ref|YP_966976.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio vu...
0.0 [1..776] [1..776]
gi|53804153, gi|... - gi|53804153|ref|YP_114227.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Methylococcus cap...
0.0 [1..753] [1..755]
gi|25289927 - pir||AB3354 ATP-dependent clp proteinase ATP-binding chain clpa BMEI0816 [imported] - Brucella melit...
gi|225627637, gi... - gi|225627637|ref|ZP_03785674.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella ceti s...
gi|225852666, gi... - gi|225852666|ref|YP_002732899.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella melit...
gi|17987099, gi|... - gi|17987099|ref|NP_539733.1| ATP-dependent Clp protease ATP-binding subunit CLPA [Brucella melitensi...
gi|9542862 - gi|9542862|emb|CAC00480.1| ClpA protein [Brucella suis]
gi|254693876 - gi|254693876|ref|ZP_05155704.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella abortu...
gi|254697527 - gi|254697527|ref|ZP_05159355.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella abortu...
gi|237815588, gi... - gi|237815588|ref|ZP_04594585.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella abortu...
gi|82700007 - gi|82700007|ref|YP_414581.1| chaperonin ClpA/B [Brucella melitensis biovar Abortus 2308]
gi|254689392 - gi|254689392|ref|ZP_05152646.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella abortu...
gi|254730422 - gi|254730422|ref|ZP_05189000.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella abortu...
gi|254706650 - gi|254706650|ref|ZP_05168478.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella pinnip...
gi|254710243 - gi|254710243|ref|ZP_05172054.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella pinnip...
gi|189019892, gi... - gi|189024320|ref|YP_001935088.1| ATP-dependent CLP protease ATP-binding subunit CLPA [Brucella abort...
gi|161619120, gi... - gi|161619120|ref|YP_001593007.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella canis...
gi|62196214, gi|... - gi|62290082|ref|YP_221875.1| ClpA, ATP-dependent Clp protease, ATP-binding subunit ClpA [Brucella ab...
gi|82616108 - gi|82616108|emb|CAJ11147.1| Chaperonin clpA/B:ATP/GTP-binding site motif A (P-loop):AAA ATPase:AAA A...
gi|23502047, gi|... - gi|23502047|ref|NP_698174.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Brucella suis 133...
0.0 [2..775] [4..790]
gi|83645152, gi|... - gi|83645152|ref|YP_433587.1| ATPase with chaperone activity, ATP-binding subunit [Hahella chejuensis...
0.0 [1..755] [1..757]
gi|89350809, gi|... - gi|89360077|ref|ZP_01197896.1| ATPas [Xanthobacter autotrophicus Py2], gi|89350809|gb|EAS16091.1| AT...
0.0 [2..774] [4..784]
gi|126440168, gi... - gi|126440168|ref|YP_001058011.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Burkholderia p...
gi|217397160, gi... - gi|217419856|ref|ZP_03451362.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Burkholderia ps...
gi|124293430, gi... - gi|124385410|ref|YP_001027039.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Burkholderia ...
gi|126452761, gi... - gi|126452761|ref|YP_001065245.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Burkholderia p...
gi|126240855, gi... - gi|126447985|ref|YP_001081688.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Burkholderia ...
gi|53718540, gi|... - gi|53718540|ref|YP_107526.1| putative ATP-dependent Clp protease ATP-binding subunit [Burkholderia p...
gi|167003874, gi... - gi|243060668|gb|EES42854.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Burkholderia malle...
gi|167814614 - gi|167814614|ref|ZP_02446294.1| ATP-dependent Clp protease ATP-binding subunit clpA [Burkholderia ps...
gi|169653768, gi... - gi|67761580|ref|ZP_00500288.1| COG0542: ATPases with chaperone activity, ATP-binding subunit [Burkho...
gi|84523635, gi|... - gi|84523635|ref|ZP_01010771.1| COG0542: ATPases with chaperone activity, ATP-binding subunit [Burkho...
gi|85065449 - gi|85065449|ref|ZP_01026302.1| COG0542: ATPases with chaperone activity, ATP-binding subunit [Burkho...
gi|237811162, gi... - gi|237811162|ref|YP_002895613.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Burkholderia p...
gi|225933574, gi... - gi|226194489|ref|ZP_03790087.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Burkholderia ps...
gi|53725848, gi|... - gi|53725848|ref|YP_103844.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Burkholderia mall...
gi|147751779, gi... - gi|83626685|ref|ZP_00936909.1| COG0542: ATPases with chaperone activity, ATP-binding subunit [Burkho...
gi|242314903, gi... - gi|82534296|ref|ZP_00893337.1| hypothetical protein Bpse110_02004476 [Burkholderia pseudomallei 1106...
gi|67642116, gi|... - gi|67642116|ref|ZP_00440877.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Burkholderia mal...
gi|194522785, gi... - gi|83621439|ref|ZP_00931848.1| COG0542: ATPases with chaperone activity, ATP-binding subunit [Burkho...
gi|67682370, gi|... - gi|67682370|ref|ZP_00476620.1| COG0542: ATPases with chaperone activity, ATP-binding subunit [Burkho...
gi|254181504, gi... - gi|99911512|ref|ZP_01318372.1| hypothetical protein Bpse1_03002253 [Burkholderia pseudomallei 1655],...
0.0 [1..763] [1..766]
gi|67637968, gi|... - gi|67637968|ref|ZP_00436906.1| COG0542: ATPases with chaperone activity, ATP-binding subunit [Burkho...
gi|194318279, gi... - gi|254178978|ref|ZP_04885632.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Burkholderia m...
0.0 [1..763] [1..766]
gi|83654102, gi|... - gi|83720277|ref|YP_441319.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Burkholderia thai...
0.0 [1..763] [1..766]
gi|71848329, gi|... - gi|71908708|ref|YP_286295.1| AAA ATPase, central region:Clp, N terminal [Dechloromonas aromatica RCB...
0.0 [1..753] [1..752]

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Predicted Domain #1
Region A:
Residues: [1-776]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGKRLQAAL NAAVGEVRVR NHEYLTLEHL LYAIAGEEQG KGILEGCGAD VTALRARLEE  60
   61 FFGTHLESLP EDMTTEVVQT LGVQRVLQRA FRHIQSAGRP LVEIGDVLAA LFDEDDTYAV 120
  121 YFLKTQGVSR LDVLEYISHA MPEADDDAMD GDDEGDGGAS TRADALAQYA TDLTARAREG 180
  181 RIDPLIGRED ELERTVQVLS RRRKNNPLFV GDPGVGKTAI AEGLALRIAV GAVPESFRKA 240
  241 RVYALDMGSL LAGTKYRGDF EARLKAVISE LSRQPDAILF IDEIHTIVGA GATSGGSMDA 300
  301 SNILKPVLAS GAIRCIGSTT HEEYRNHFEK DRALSRRFQK IDIGEPTQEE CVEILKGLKE 360
  361 HYEEHHAVRY TLPALRAAVE LSARYVNDRL LPDKAIDVID EAGAAMRLRA GFKPGASVSV 420
  421 QDVERVVARM AHVPPRSISS SDRDRLKTLE NDLGKAVFGQ EAAVAVVARS ILRARAGFGR 480
  481 EDRPTGSFLF YGPTGVGKTE LARSLAKRLG VAFLRYDMSE YMEKHAVSRF IGAPPGYVGY 540
  541 DQGGQLTEAV RRTPYAVVLL DEMEKAHPDI FNVLLQVMDY ATLTDNTGRK ADFRNVVLIM 600
  601 TSNAGVREMS APSIGFTGGG VEDVTAKGRK AVETLFSPEF RNRLDALVPF GSLAPEVMER 660
  661 IVDKFVREVE NGLRERRVRL ELTAAARQRL AEKGFDPAFG ARPLRRVIRT AIEDELAKEM 720
  721 LFGRLRKGGT VHVDALPQAP KTAGVAGQGG ATPDAASLGL QFSYRERGEG SAEPAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 142.0
Match: 1ksfX
Description: N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone; ClpA, an Hsp100 chaperone, AAA+ modules
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 2.55157966585974 bayes_pls_golite062009
binding 1.41264401383678 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
purine nucleotide binding 0.569910969126728 bayes_pls_golite062009
purine ribonucleotide binding 0.568840867400671 bayes_pls_golite062009
ribonucleotide binding 0.568779924702229 bayes_pls_golite062009
nucleotide binding 0.564275755355315 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.546796591575762 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.543610140926125 bayes_pls_golite062009
pyrophosphatase activity 0.540750418412449 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.517457589081898 bayes_pls_golite062009
ATP binding 0.1860481660648 bayes_pls_golite062009
adenyl ribonucleotide binding 0.152859582615242 bayes_pls_golite062009
adenyl nucleotide binding 0.138615225841109 bayes_pls_golite062009
nucleic acid binding 0.030747546048349 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle