YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|255054070, gi...
Organism:	Pectobacterium wasabiae WPP163
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|255054070, gi....

Description	E-value	Query Range	Subject Range
gi\|77978684, gi\|... - gi\|77978684\|ref\|ZP_00834110.1\| COG1349: Transcriptional regulators of sugar metabolism [Yersinia int...	247.0	[0..1]	[252..1]
gi\|83571653 - gi\|83571653\|ref\|ZP_00923093.1\| COG1349: Transcriptional regulators of sugar metabolism [Shigella dys...	247.0	[0..1]	[252..13]
gi\|110616805, gi... - gi\|110807257\|ref\|YP_690777.1\| DNA-binding transcriptional repressor GlpR [Shigella flexneri 5 str. 8... gi\|238860967, gi... - gi\|238902516\|ref\|YP_002928312.1\| DNA-binding transcriptional repressor [Escherichia coli BW2952], gi... gi\|253322792, gi... - gi\|253771748\|ref\|YP_003034579.1\| transcriptional regulator, DeoR family [Escherichia coli BL21(DE3)]... gi\|226839096, gi... - gi\|254038590\|ref\|ZP_04872646.1\| glycerol-3-phosphate regulon repressor [Escherichia sp. 1_1_43], gi\|... gi\|606358\|gb\|AAA... - CG Site No. 688 [Escherichia coli], DNA-binding transcriptional repressor [Escherichia coli K12], DN... gi\|73857500, gi\|... - gi\|74314023\|ref\|YP_312442.1\| DNA-binding transcriptional repressor GlpR [Shigella sonnei Ss046], gi\|... gi\|170683823, gi... - gi\|170683823\|ref\|YP_001745670.1\| glycerol-3-phosphate regulon repressor [Escherichia coli SMS-3-5], ... gi\|82778762, gi\|... - gi\|82778762\|ref\|YP_405111.1\| DNA-binding transcriptional repressor GlpR [Shigella dysenteriae Sd197]... gi\|169890773, gi... - gi\|170082938\|ref\|YP_001732258.1\| DNA-binding transcriptional repressor [Escherichia coli str. K-12 s... gi\|192957880, gi... - gi\|75237024\|ref\|ZP_00721080.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ... gi\|209920880, gi... - gi\|209920880\|ref\|YP_002294964.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli SE11],... gi\|193061762, gi... - gi\|75260289\|ref\|ZP_00731557.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ... gi\|194431129, gi... - gi\|194431129\|ref\|ZP_03063422.1\| glycerol-3-phosphate regulon repressor [Shigella dysenteriae 1012], ... gi\|218697105, gi... - gi\|218697105\|ref\|YP_002404772.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli 55989]... gi\|218362739, gi... - gi\|218555971\|ref\|YP_002388884.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli IAI1],... gi\|81247190, gi\|... - gi\|82545779\|ref\|YP_409726.1\| DNA-binding transcriptional repressor GlpR [Shigella boydii Sb227], gi\|... gi\|218707013, gi... - gi\|218707013\|ref\|YP_002414532.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli UMN026... gi\|89110588, gi\|... - gi\|89110588\|ref\|AP_004368.1\| DNA-binding transcriptional repressor [Escherichia coli str. K-12 subst... gi\|218372153, gi... - gi\|218702167\|ref\|YP_002409796.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli IAI39]... GLPR_ECOLI - Glycerol-3-phosphate regulon repressor - Escherichia coli GLPR_SHIFL - Glycerol-3-phosphate regulon repressor OS=Shigella flexneri GN=glpR PE=3 SV=1 gi\|24053898, gi\|... - gi\|24114688\|ref\|NP_709198.1\| DNA-binding transcriptional repressor GlpR [Shigella flexneri 2a str. 3... gi\|75211789, gi\|... - gi\|75211789\|ref\|ZP_00711853.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ... gi\|75229568, gi\|... - gi\|75229568\|ref\|ZP_00716111.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ... gi\|30043556, gi\|... - gi\|30065294\|ref\|NP_839465.1\| DNA-binding transcriptional repressor GlpR [Shigella flexneri 2a str. 2... gi\|187731240, gi... - gi\|75179956\|ref\|ZP_00699943.1\| COG1349: Transcriptional regulators of sugar metabolism [Shigella boy... gi\|1789829, gi\|1... - gi\|1789829\|gb\|AAC76448.1\| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. ... gi\|157080914, gi... - gi\|75188196\|ref\|ZP_00701463.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ...	247.0	[0..1]	[252..1]
gi\|254795340, gi... - gi\|254795340\|ref\|YP_003080177.1\| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str... gi\|168765774, gi... - gi\|189364645\|gb\|EDU83064.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str. EC... gi\|168759451, gi... - gi\|189369659\|gb\|EDU88075.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str. EC... gi\|189359067, gi... - gi\|189359067\|gb\|EDU77486.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str. EC... gi\|188018387, gi... - gi\|188018387\|gb\|EDU56509.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str. EC... gi\|209756348, gi... - pir\|\|C86008 glp operon repressor [imported] - Escherichia coli (strain O157:H7, substrain EDL933), ... gi\|15803930, gi\|... - gi\|15803930\|ref\|NP_289966.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli O157:H7 ED... gi\|13363740, gi\|... - gi\|15833520\|ref\|NP_312293.1\| GlpR [Escherichia coli O157:H7], gi\|13363740\|dbj\|BAB37689.1\| repressor ... gi\|217321601, gi... - gi\|217325380\|ref\|ZP_03441464.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str... gi\|209398865, gi... - gi\|209398865\|ref\|YP_002272860.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 st... gi\|189379928, gi... - gi\|189379928\|gb\|EDU98344.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str. EC... gi\|168785231, gi... - gi\|189374493\|gb\|EDU92909.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str. EC... gi\|189002352, gi... - gi\|189002352\|gb\|EDU71338.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str. EC... gi\|187771671, gi... - gi\|187771671\|gb\|EDU35515.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str. EC... gi\|208820819, gi... - gi\|208820819\|ref\|ZP_03261139.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str... gi\|13363740, gi\|... - gi\|15833520\|ref\|NP_312293.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli O157:H7 st... gi\|208811951, gi... - gi\|208811951\|ref\|ZP_03253280.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str... gi\|208809607, gi... - gi\|208809607\|ref\|ZP_03251944.1\| glycerol-3-phosphate regulon repressor [Escherichia coli O157:H7 str... gi\|195934913 - gi\|195934913\|ref\|ZP_03080295.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli O157:H7...	246.0	[0..1]	[252..1]
gi\|115514811, gi... - gi\|117625687\|ref\|YP_859010.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli APEC O1],...	246.0	[0..1]	[252..13]
gi\|75241487 - gi\|75241487\|ref\|ZP_00725332.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ...	246.0	[0..1]	[252..13]
gi\|191171550, gi... - gi\|191171550\|ref\|ZP_03033098.1\| glycerol-3-phosphate regulon repressor [Escherichia coli F11], gi\|19... gi\|215266775, gi... - gi\|215488703\|ref\|YP_002331134.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli O127:H... gi\|218367248, gi... - gi\|218560479\|ref\|YP_002393392.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli S88], ... gi\|218429262, gi... - gi\|218691698\|ref\|YP_002399910.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli ED1a],... gi\|227883557, gi... - gi\|227883557\|ref\|ZP_04001362.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli 83972],... gi\|110345247, gi... - gi\|110643655\|ref\|YP_671385.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli 536], gi\|...	246.0	[0..1]	[252..1]
gi\|169753270, gi... - gi\|170018342\|ref\|YP_001723296.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli ATCC 8... gi\|124528194, gi... - gi\|124528194\|ref\|ZP_01699527.1\| transcriptional regulator, DeoR family [Escherichia coli B], gi\|1245... gi\|188488976, gi... - gi\|75516110\|ref\|ZP_00738228.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ... gi\|157162900, gi... - gi\|75197353\|ref\|ZP_00707423.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ...	245.0	[0..1]	[252..1]
gi\|91074471, gi\|... - gi\|91212897\|ref\|YP_542883.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli UTI89], gi... gi\|237703154, gi... - gi\|237703154\|ref\|ZP_04533635.1\| glycerol-3-phosphate regulon repressor [Escherichia sp. 3_2_53FAA], ... gi\|26110453, gi\|... - gi\|26250024\|ref\|NP_756064.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli CFT073], g...	245.0	[0..1]	[252..18]
gi\|83588713 - gi\|83588713\|ref\|ZP_00927337.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ...	245.0	[0..1]	[252..13]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQTQRHDAI IELVRRQGYV STEELVDHFA VSPQTIRRDL NDLAEQNKIH RHHGGAALPS  60
   61 SSVNTAYHDR KMMWSDEKAR IARRVASQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.39794
Match:	1i1gA
Description:	LprA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.98990675336286	bayes_pls_golite062009
DNA binding	3.4273272886116	bayes_pls_golite062009
nucleic acid binding	3.38054693035398	bayes_pls_golite062009
transcription factor activity	2.80110428028438	bayes_pls_golite062009
binding	2.18911933843505	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
transcription repressor activity	0.513853050429619	bayes_pls_golite062009
protein binding	0.035220363090062	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [89-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPDGATLFID IGTTPEAVAY ALMQHKDLRV VTNNLNVATL LTAKEDFRLI LAGGEVRTRD  60
   61 GGIMGEATLD FISQFRLDFG ILGISGIDMD GSLLEFDYHE VRTKRAIIEN SRCVMLVTDH 120
  121 SKFGRNAMVN LGNMDLIDYL FTDQSPPPSV LKIIEQHKVQ LELC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.09691
Match:	2pjmA
Description:	No description for 2pjmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: