YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|255028594
Organism:	Listeria monocytogenes LO28
Length:	515 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|255028594.

Description	E-value	Query Range	Subject Range
gi\|16799783 - gi\|16799783\|ref\|NP_470051.1\| flagellar motor switch protein [Listeria innocua Clip11262] gi\|25515109, gi\|... - pir\|\|AD1521 flagellar motor switch protein fliY homolog lin0708 [imported] - Listeria innocua (strai...	382.0	[0..1]	[515..1]
gi\|46880217, gi\|... - gi\|46906951\|ref\|YP_013340.1\| flagellar motor switch protein [Listeria monocytogenes str. 4b F2365], ... gi\|47019981, gi\|... - gi\|47091662\|ref\|ZP_00229458.1\| flagellar motor switch domain protein [Listeria monocytogenes str. 4b... gi\|153165997, gi... - gi\|153165997\|ref\|ZP_01926662.1\| flagellar motor switch domain protein [Listeria monocytogenes FSL N1...	379.0	[0..12]	[515..1]
gi\|47095266, gi\|... - gi\|47095266\|ref\|ZP_00232877.1\| flagellar motor switch domain protein [Listeria monocytogenes str. 1/...	379.0	[0..12]	[515..1]
gi\|228656410, gi... - gi\|229127057\|ref\|ZP_04256056.1\| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4], gi\|2... gi\|30019776, gi\|... - gi\|30019776\|ref\|NP_831407.1\| flagellar motor switch protein [Bacillus cereus ATCC 14579], gi\|2989532...	372.0	[0..5]	[512..18]
gi\|74491863, gi\|... - gi\|75760649\|ref\|ZP_00740677.1\| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis A...	370.0	[0..5]	[512..18]
gi\|254683220 - gi\|254683220\|ref\|ZP_05147081.1\| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066] gi\|254723808 - gi\|254723808\|ref\|ZP_05185594.1\| flagellar motor switch protein [Bacillus anthracis str. A1055] gi\|254734572 - gi\|254734572\|ref\|ZP_05192284.1\| flagellar motor switch protein [Bacillus anthracis str. Western Nort... gi\|254740981 - gi\|254740981\|ref\|ZP_05198669.1\| flagellar motor switch protein [Bacillus anthracis str. Kruger B] gi\|254755222 - gi\|254755222\|ref\|ZP_05207256.1\| flagellar motor switch protein [Bacillus anthracis str. Vollum] gi\|190562435, gi... - gi\|190566300\|ref\|ZP_03019218.1\| putative flagellar motor switch protein [Bacillus anthracis Tsiankov... gi\|196033496, gi... - gi\|196033496\|ref\|ZP_03100908.1\| putative flagellar motor switch protein [Bacillus cereus W], gi\|1959... gi\|49178486, gi\|... - gi\|49184559\|ref\|YP_027811.1\| flagellar motor switch protein [Bacillus anthracis str. Sterne], gi\|491... gi\|51977197, gi\|... - gi\|52143728\|ref\|YP_083102.1\| flagellar motor switch protein [Bacillus cereus E33L], gi\|51977197\|gb\|A... gi\|30255959, gi\|... - gi\|30261731\|ref\|NP_844108.1\| flagellar motor switch protein [Bacillus anthracis str. Ames], gi\|30255... gi\|47526949, gi\|... - gi\|47526949\|ref\|YP_018298.1\| flagellar motor switch protein [Bacillus anthracis str. 'Ames Ancestor'... gi\|227815513, gi... - gi\|227815513\|ref\|YP_002815522.1\| putative flagellar motor switch protein [Bacillus anthracis str. CD... gi\|228945334, gi... - gi\|228945334\|ref\|ZP_04107689.1\| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar m... gi\|65318998, gi\|... - gi\|65318998\|ref\|ZP_00391957.1\| COG1776: Chemotaxis protein CheC, inhibitor of MCP methylation [Bacil... gi\|229600257, gi... - gi\|229600257\|ref\|YP_002866132.1\| putative flagellar motor switch protein [Bacillus anthracis str. A0...	369.0	[0..5]	[512..18]
gi\|49328867, gi\|... - gi\|49477311\|ref\|YP_035851.1\| flagellar motor switch protein [Bacillus thuringiensis serovar konkukia...	369.0	[0..5]	[512..18]
gi\|47557031, gi\|... - gi\|47566114\|ref\|ZP_00237152.1\| chemotaxis protein cheC [Bacillus cereus G9241], gi\|47557031\|gb\|EAL15...	361.0	[0..5]	[512..18]
gi\|42736743, gi\|... - gi\|42780823\|ref\|NP_978070.1\| flagellar motor switch protein [Bacillus cereus ATCC 10987], gi\|4273674...	361.0	[0..5]	[512..18]
gi\|229166572, gi... - gi\|229166572\|ref\|ZP_04294324.1\| CheC, inhibitor of MCP methylation [Bacillus cereus AH621], gi\|22861... gi\|163939537, gi... - gi\|89204841\|ref\|ZP_01183416.1\| Surface presentation of antigens (SPOA) protein:CheC-like protein [Ba...	357.0	[0..5]	[512..18]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQLLEKNIT QMELDVIGEI ANISFGSAST VLSDLLHQQV TISTPKVEIV DLYNTKDIDI  60
   61 PHVVLEVNFH KGIEMRNLFV LQSEVAAAIA DLMMMGDGNI DPNEELSELH LSAVQEAMNQ 120
  121 MMGHSATAMS NMFGEMIDIT TPDIKVIALK EQLEDTNDQT MIKVGFDLII GDLITSNLMQ 180
  181 LIPVDKGREL AKRLLGDAVP EADPV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	1xkrA
Description:	X-ray Structure of Thermotoga maritima CheC
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [206-406]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEEISLTAEE LDVFLEVCNI GIGSASTVLS KLLNRKVSLQ IPTARVIDSK EFEFNERPCL  60
   61 VTSVEFVEGL RSSNTFIISK NAALIMADLM MMGDGIVQED AELTELEVSA VQELMNQMMG 120
  121 FSATAMSEML GTKIDISPPT MEFCNFGDTM IQKNIEEGKT VEVIFPLEVD GLLKTPMYQI 180
  181 FNPAAAKEMA QLMLGIQAKE V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.30103
Match:	2hp7A
Description:	No description for 2hp7A was found.

Predicted Domain #3

Region A:
Residues: [407-515]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEKEATTPAE IIEPEKPAEP IKHTVIEEKE TLSEMEQILE DIPVTLEVVF GTAKVKLEKF  60
   61 ISWCEKDVII LKESMNEPLV LALNGVTIGK GILVRVDDHF GIQMTELVR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.09691
Match:	1o6aA
Description:	Crystal structure of the c-terminal fragment of the putative flagelar motor switch protein FliN (TM0680a) from Thermotoga maritima at 1.85 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
motor activity	3.07201707618408	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.17271522721174	bayes_pls_golite062009
pyrophosphatase activity	1.12849207458848	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.10878539079436	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.10781034885807	bayes_pls_golite062009
binding	0.851616221377121	bayes_pls_golite062009
hydrolase activity	0.325371951256	bayes_pls_golite062009
protein binding	0.253452523212299	bayes_pls_golite062009
catalytic activity	0.145477743192426	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: