YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238911150
Organism:	Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191
Length:	428 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238911150.

Description	E-value	Query Range	Subject Range
SURA_SALCH - Chaperone SurA OS=Salmonella choleraesuis (strain SC-B67) GN=surA PE=3 SV=1 SURA_SALCH - Chaperone surA OS=Salmonella choleraesuis GN=surA PE=3 SV=1 SURA_SALCH - Chaperone surA OS=Salmonella choleraesuis GN=surA PE=3 SV=1	4.0E-90	[1..428]	[1..428]
gi\|77976135, gi\|... - gi\|77976135\|ref\|ZP_00831668.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Yersinia frederikse...	4.0E-90	[1..427]	[1..427]
gi\|77959759, gi\|... - gi\|77959759\|ref\|ZP_00823776.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Yersinia bercovieri...	3.0E-89	[1..427]	[1..427]
gi\|77976651, gi\|... - gi\|77976651\|ref\|ZP_00832128.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Yersinia intermedia...	8.0E-89	[1..427]	[1..427]
gi\|77961918, gi\|... - gi\|77961918\|ref\|ZP_00825746.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Yersinia mollaretii...	2.0E-88	[1..427]	[1..427]
SURA_PHOLL - Chaperone SurA OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) G... SURA_PHOLL - Chaperone surA OS=Photorhabdus luminescens subsp. laumondii GN=surA PE=3 SV=1	4.0E-88	[1..427]	[1..427]
gi\|167401555, gi... - gi\|167401555\|ref\|ZP_02307049.1\| chaperone SurA [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|1... SURA_YERPA - Chaperone SurA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=surA PE=3 SV=1	6.0E-88	[1..427]	[1..427]
SURA_YERPS - Chaperone surA OS=Yersinia pseudotuberculosis GN=surA PE=3 SV=1 gi\|165919954, gi... - gi\|165928093\|ref\|ZP_02223925.1\| chaperone SurA [Yersinia pestis biovar Orientalis str. F1991016], gi... SURA_YERPE - Chaperone SurA OS=Yersinia pestis GN=surA PE=3 SV=1 gi\|152960604, gi... - gi\|77631618\|ref\|ZP_00794204.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Yersinia pseudotube... gi\|45443417, gi\|... - gi\|45443417\|ref\|NP_994956.1\| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis biovar Microt... gi\|21960659, gi\|... - gi\|22127555\|ref\|NP_670978.1\| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis KIM], gi\|2196... gi\|15978588, gi\|... - gi\|218927692\|ref\|YP_002345567.1\| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis CO92], gi... gi\|229836923, gi... - gi\|229836923\|ref\|ZP_04457088.1\| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis Pestoi... SURA_YERPS - Chaperone SurA OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=surA PE=3 SV=1 gi\|229840382, gi... - gi\|229840382\|ref\|ZP_04460541.1\| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis biovar... gi\|229690772, gi... - gi\|229842462\|ref\|ZP_04462617.1\| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis biovar... gi\|150260469, gi... - gi\|150260469\|ref\|ZP_01917197.1\| survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase... gi\|145600395, gi... - gi\|145600395\|ref\|YP_001164471.1\| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Pestoides... gi\|166206966, gi... - gi\|166212220\|ref\|ZP_02238255.1\| chaperone SurA [Yersinia pestis biovar Antiqua str. B42003004], gi\|1... gi\|166008803, gi... - gi\|166008803\|ref\|ZP_02229701.1\| chaperone SurA [Yersinia pestis biovar Antiqua str. E1979001], gi\|16... gi\|167426071, gi... - gi\|167426071\|ref\|ZP_02317824.1\| chaperone SurA [Yersinia pestis biovar Mediaevalis str. K1973002], g... gi\|167422012, gi... - gi\|167422012\|ref\|ZP_02313765.1\| chaperone SurA [Yersinia pestis biovar Orientalis str. MG05-1020], g... gi\|89102171, gi\|... - gi\|89102171\|ref\|ZP_01174826.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Yersinia pestis bio... gi\|170025786, gi... - gi\|170025786\|ref\|YP_001722291.1\| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pseudotuberculos... SURA_YERPN - Chaperone SurA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=surA PE=3 SV=1 gi\|167470553 - gi\|167470553\|ref\|ZP_02335257.1\| chaperone SurA [Yersinia pestis FV-1] gi\|186893987, gi... - gi\|186893987\|ref\|YP_001871099.1\| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pseudotuberculos...	7.0E-88	[1..427]	[1..427]
gi\|162352906, gi... - gi\|77634657\|ref\|ZP_00796753.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Yersinia pestis Ang...	1.0E-87	[1..427]	[1..427]
gi\|66047852, gi\|... - gi\|66047852\|ref\|YP_237693.1\| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv....	1.0E-85	[4..426]	[11..433]

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Predicted Domain #1

Region A:
Residues: [1-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNWKTLLLG IAMIANTSFA APQVVDKVAA VVNNGVVLES DVDGLMQSVK LNAGQAGQQL  60
   61 PDDATLRHQI LERLIMDQII LQMGQKMGVK ITDEQLDQAI ANIAKQNNMT MDQMRSRLAY 120
  121 DGLNYSTYRN QIRKEMIISE VRNNEVRRRI TVLPQEVDAL AKQIGTQNDA STELNLSHIL 180
  181 IALPENPTSE QVNDAQRQAE SIVEEARNGA DFGKLAITYS ADQQALKGGQ MGWGRIQELP 240
  241 GIFAQALSTA KKGDIVGPIR SGVGFHILKV NDLRGQSQSI SVTEVHARHI LLKPSPIMND 300
  301 QQARLKLEEI AADIKSGKTT FAAAAKEYSQ DPGSANQGGD LGWATPDIFD PAFRDALTKL 360
  361 HKGQISAPVH SSFGWHLIEL LDTRKVDKTD AAQKDRAYRM LMNRKFSEEA ATWMQEQRAS 420
  421 AYVKILSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.0
Match:	1m5yA
Description:	Porin chaperone SurA, peptide-binding domain; Porin chaperone SurA, PPIase domains
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidyl-prolyl cis-trans isomerase activity	4.4182664267098	bayes_pls_golite062009
cis-trans isomerase activity	4.33661522951196	bayes_pls_golite062009
isomerase activity	2.83057106437196	bayes_pls_golite062009
macrolide binding	1.34183721806994	bayes_pls_golite062009
catalytic activity	1.25572252987503	bayes_pls_golite062009
FK506 binding	1.11705415888427	bayes_pls_golite062009
binding	0.863342313564958	bayes_pls_golite062009
transcription regulator activity	0.623063015282266	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: