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View Structure Prediction Details

Protein: gi|228842757, gi...
Organism: Bacillus thuringiensis serovar pulsiensis BGSC 4CC1
Length: 132 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|228842757, gi....

Description E-value Query
Range
Subject
Range
gi|42783427, gi|... - gi|42783427|ref|NP_980674.1| cytidine deaminase [Bacillus cereus ATCC 10987], gi|42739356|gb|AAS4328...
1.0E-47 [1..132] [1..132]
gi|89208394, gi|... - gi|89208394|ref|ZP_01186903.1| Cytidine deaminase, homotetrameric [Bacillus weihenstephanensis KBAB4...
gi|229013521, gi... - gi|229013521|ref|ZP_04170655.1| Cytidine deaminase [Bacillus mycoides DSM 2048], gi|228747758|gb|EEL...
gi|228614458, gi... - gi|229169049|ref|ZP_04296765.1| Cytidine deaminase [Bacillus cereus AH621], gi|228614458|gb|EEK71567...
gi|229135126, gi... - gi|229135126|ref|ZP_04263928.1| Cytidine deaminase [Bacillus cereus BDRD-ST196], gi|228648355|gb|EEL...
3.0E-47 [1..132] [1..132]
gi|21402347, gi|... - gi|65321673|ref|ZP_00394632.1| COG0295: Cytidine deaminase [Bacillus anthracis str. A2012], ref|NP_6...
8.0E-47 [1..132] [1..132]
gi|218537160, gi... - gi|218903047|ref|YP_002450881.1| cytidine deaminase [Bacillus cereus AH820], gi|218537160|gb|ACK8955...
gi|228826393, gi... - gi|228933232|ref|ZP_04096088.1| Cytidine deaminase [Bacillus thuringiensis serovar andalousiensis BG...
gi|196033344, gi... - gi|196033344|ref|ZP_03100756.1| cytidine deaminase [Bacillus cereus W], gi|195993778|gb|EDX57734.1| ...
gi|228832726, gi... - gi|228926991|ref|ZP_04090057.1| Cytidine deaminase [Bacillus thuringiensis serovar pondicheriensis B...
gi|190566429, gi... - gi|190566429|ref|ZP_03019347.1| cytidine deaminase [Bacillus anthracis Tsiankovskii-I], gi|190562564...
gi|228914521, gi... - gi|228914521|ref|ZP_04078130.1| Cytidine deaminase [Bacillus thuringiensis serovar pulsiensis BGSC 4...
gi|172083639, gi... - gi|177650495|ref|ZP_02933462.1| cytidine deaminase [Bacillus anthracis str. A0174], gi|172083639|gb|...
gi|227815286, gi... - gi|227815286|ref|YP_002815295.1| cytidine deaminase [Bacillus anthracis str. CDC 684], gi|227006681|...
gi|167638711, gi... - gi|167638711|ref|ZP_02396986.1| cytidine deaminase [Bacillus anthracis str. A0193], gi|167513175|gb|...
gi|229603514, gi... - gi|229603514|ref|YP_002866302.1| cytidine deaminase [Bacillus anthracis str. A0248], gi|229267922|gb...
gi|167531512, gi... - gi|167633474|ref|ZP_02391799.1| cytidine deaminase [Bacillus anthracis str. A0442], gi|167531512|gb|...
gi|228661941, gi... - gi|229121477|ref|ZP_04250704.1| Cytidine deaminase [Bacillus cereus 95/8201], gi|228661941|gb|EEL175...
gi|165869405, gi... - gi|165869405|ref|ZP_02214064.1| cytidine deaminase [Bacillus anthracis str. A0488], gi|164714845|gb|...
gi|228692429, gi... - gi|229090909|ref|ZP_04222135.1| Cytidine deaminase [Bacillus cereus Rock3-42], gi|228692429|gb|EEL46...
gi|228945541, gi... - gi|228945541|ref|ZP_04107891.1| Cytidine deaminase [Bacillus thuringiensis serovar monterrey BGSC 4A...
gi|254741196 - gi|254741196|ref|ZP_05198884.1| cytidine deaminase [Bacillus anthracis str. Kruger B]
gi|254734795 - gi|254734795|ref|ZP_05192507.1| cytidine deaminase [Bacillus anthracis str. Western North America US...
gi|254721195 - gi|254721195|ref|ZP_05182985.1| cytidine deaminase [Bacillus anthracis str. A1055]
gi|254684491 - gi|254684491|ref|ZP_05148351.1| cytidine deaminase [Bacillus anthracis str. CNEVA-9066]
gi|254759985 - gi|254759985|ref|ZP_05212009.1| cytidine deaminase [Bacillus anthracis str. Australia 94]
gi|254755448 - gi|254755448|ref|ZP_05207482.1| cytidine deaminase [Bacillus anthracis str. Vollum]
gi|52143527, gi|... - gi|52143527|ref|YP_083301.1| cytidine deaminase [Bacillus cereus E33L], gi|51976996|gb|AAU18546.1| c...
gi|49184769, gi|... - gi|49184769|ref|YP_028021.1| cytidine deaminase [Bacillus anthracis str. Sterne], gi|49178696|gb|AAT...
gi|49332706, gi|... - gi|49481150|ref|YP_036067.1| cytidine deaminase [Bacillus thuringiensis serovar konkukian str. 97-27...
gi|30261929, gi|... - gi|30261929|ref|NP_844306.1| cytidine deaminase [Bacillus anthracis str. Ames], gi|30256555|gb|AAP25...
gi|47527190, gi|... - gi|47527190|ref|YP_018539.1| cytidine deaminase [Bacillus anthracis str. 'Ames Ancestor'], gi|475023...
1.0E-46 [1..131] [1..131]
gi|29897937, gi|... - gi|30022379|ref|NP_834010.1| cytidine deaminase [Bacillus cereus ATCC 14579], gi|29897937|gb|AAP1121...
gi|228980990, gi... - gi|228980990|ref|ZP_04141293.1| Cytidine deaminase [Bacillus thuringiensis Bt407], gi|228778781|gb|E...
gi|228785447, gi... - gi|228974397|ref|ZP_04134966.1| Cytidine deaminase [Bacillus thuringiensis serovar thuringiensis str...
gi|228941466, gi... - gi|228941466|ref|ZP_04104017.1| Cytidine deaminase [Bacillus thuringiensis serovar berliner ATCC 107...
gi|228836686, gi... - gi|228923053|ref|ZP_04086346.1| Cytidine deaminase [Bacillus thuringiensis serovar huazhongensis BGS...
gi|218232971, gi... - gi|218232971|ref|YP_002369108.1| cytidine deaminase [Bacillus cereus B4264], gi|218160928|gb|ACK6092...
gi|229152501, gi... - gi|229152501|ref|ZP_04280693.1| Cytidine deaminase [Bacillus cereus m1550], gi|228631109|gb|EEK87746...
gi|229129578, gi... - gi|229129578|ref|ZP_04258548.1| Cytidine deaminase [Bacillus cereus BDRD-Cer4], gi|228653895|gb|EEL0...
1.0E-46 [1..132] [1..132]
gi|52786456, gi|... - gi|52786456|ref|YP_092285.1| hypothetical protein BLi02721 [Bacillus licheniformis ATCC 14580], gi|5...
2.0E-46 [1..132] [1..132]
gi|47570605, gi|... - gi|47570605|ref|ZP_00241221.1| cytidine deaminase [Bacillus cereus G9241], gi|47552728|gb|EAL11163.1...
5.0E-46 [1..131] [1..131]
gi|242232286, gi... - gi|242256209|ref|ZP_04801104.1| cytidine deaminase [Thermoanaerobacter sp. X513], gi|242232286|gb|EE...
gi|241903470, gi... - gi|241903470|ref|ZP_04788193.1| cytidine deaminase [Thermoanaerobacter brockii subsp. finnii Ako-1],...
gi|114805408, gi... - gi|167039068|ref|YP_001662053.1| cytidine deaminase [Thermoanaerobacter sp. X514], gi|166853308|gb|A...
gi|76797042, gi|... - gi|76797042|ref|ZP_00779385.1| Cytidine deaminase, homotetrameric [Thermoanaerobacter ethanolicus AT...
1.0E-45 [2..132] [5..135]
gi|20806970 - gi|20806970|ref|NP_622141.1| Cytidine deaminase [Thermoanaerobacter tengcongensis MB4]
gi|20806970, gi|... - gi|20806970|ref|NP_622141.1| cytidine deaminase [Thermoanaerobacter tengcongensis MB4], gi|20515450|...
2.0E-45 [2..132] [5..135]

Back

Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSKQLIQEA IEARKQAYVP YSKFQVGAAL LTQDGKVYRG CNVENASYGL CNCAERTALF  60
   61 KAVSEGDKEF VAIAIVADTK RPVPPCGACR QVMVELCKQD TKVYLSNLHG DVQETTVGEL 120
  121 LPGAFLAEDL HE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.221849
Match: 2d30A
Description: No description for 2d30A was found.

Predicted functions:

Term Confidence Notes
cytidine deaminase activity 4.42667374679603 bayes_pls_golite062009
deaminase activity 2.76997916054448 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 2.27736397496642 bayes_pls_golite062009
catalytic activity 1.70756445127105 bayes_pls_golite062009
binding 1.64474382695496 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 1.51294035758003 bayes_pls_golite062009
IMP cyclohydrolase activity 1.34771936728813 bayes_pls_golite062009
receptor binding 1.25331530291023 bayes_pls_golite062009
hydrolase activity 1.20889076546073 bayes_pls_golite062009
phosphoribosylaminoimidazolecarboxamide formyltransferase activity 1.06178740854563 bayes_pls_golite062009
nucleoside binding 0.66793245260795 bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity 0.36832789692523 bayes_pls_golite062009
cyclohydrolase activity 0.308525511259279 bayes_pls_golite062009
transition metal ion binding 0.25533482618887 bayes_pls_golite062009
protein binding 0.072557222523031 bayes_pls_golite062009
glycine hydroxymethyltransferase activity 0.0520808212384716 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle