YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|228842757, gi...
Organism:	Bacillus thuringiensis serovar pulsiensis BGSC 4CC1
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|228842757, gi....

Description	E-value	Query Range	Subject Range
gi\|42783427, gi\|... - gi\|42783427\|ref\|NP_980674.1\| cytidine deaminase [Bacillus cereus ATCC 10987], gi\|42739356\|gb\|AAS4328...	1.0E-47	[1..132]	[1..132]
gi\|89208394, gi\|... - gi\|89208394\|ref\|ZP_01186903.1\| Cytidine deaminase, homotetrameric [Bacillus weihenstephanensis KBAB4... gi\|229013521, gi... - gi\|229013521\|ref\|ZP_04170655.1\| Cytidine deaminase [Bacillus mycoides DSM 2048], gi\|228747758\|gb\|EEL... gi\|228614458, gi... - gi\|229169049\|ref\|ZP_04296765.1\| Cytidine deaminase [Bacillus cereus AH621], gi\|228614458\|gb\|EEK71567... gi\|229135126, gi... - gi\|229135126\|ref\|ZP_04263928.1\| Cytidine deaminase [Bacillus cereus BDRD-ST196], gi\|228648355\|gb\|EEL...	3.0E-47	[1..132]	[1..132]
gi\|21402347, gi\|... - gi\|65321673\|ref\|ZP_00394632.1\| COG0295: Cytidine deaminase [Bacillus anthracis str. A2012], ref\|NP_6...	8.0E-47	[1..132]	[1..132]
gi\|218537160, gi... - gi\|218903047\|ref\|YP_002450881.1\| cytidine deaminase [Bacillus cereus AH820], gi\|218537160\|gb\|ACK8955... gi\|228826393, gi... - gi\|228933232\|ref\|ZP_04096088.1\| Cytidine deaminase [Bacillus thuringiensis serovar andalousiensis BG... gi\|196033344, gi... - gi\|196033344\|ref\|ZP_03100756.1\| cytidine deaminase [Bacillus cereus W], gi\|195993778\|gb\|EDX57734.1\| ... gi\|228832726, gi... - gi\|228926991\|ref\|ZP_04090057.1\| Cytidine deaminase [Bacillus thuringiensis serovar pondicheriensis B... gi\|190566429, gi... - gi\|190566429\|ref\|ZP_03019347.1\| cytidine deaminase [Bacillus anthracis Tsiankovskii-I], gi\|190562564... gi\|228914521, gi... - gi\|228914521\|ref\|ZP_04078130.1\| Cytidine deaminase [Bacillus thuringiensis serovar pulsiensis BGSC 4... gi\|172083639, gi... - gi\|177650495\|ref\|ZP_02933462.1\| cytidine deaminase [Bacillus anthracis str. A0174], gi\|172083639\|gb\|... gi\|227815286, gi... - gi\|227815286\|ref\|YP_002815295.1\| cytidine deaminase [Bacillus anthracis str. CDC 684], gi\|227006681\|... gi\|167638711, gi... - gi\|167638711\|ref\|ZP_02396986.1\| cytidine deaminase [Bacillus anthracis str. A0193], gi\|167513175\|gb\|... gi\|229603514, gi... - gi\|229603514\|ref\|YP_002866302.1\| cytidine deaminase [Bacillus anthracis str. A0248], gi\|229267922\|gb... gi\|167531512, gi... - gi\|167633474\|ref\|ZP_02391799.1\| cytidine deaminase [Bacillus anthracis str. A0442], gi\|167531512\|gb\|... gi\|228661941, gi... - gi\|229121477\|ref\|ZP_04250704.1\| Cytidine deaminase [Bacillus cereus 95/8201], gi\|228661941\|gb\|EEL175... gi\|165869405, gi... - gi\|165869405\|ref\|ZP_02214064.1\| cytidine deaminase [Bacillus anthracis str. A0488], gi\|164714845\|gb\|... gi\|228692429, gi... - gi\|229090909\|ref\|ZP_04222135.1\| Cytidine deaminase [Bacillus cereus Rock3-42], gi\|228692429\|gb\|EEL46... gi\|228945541, gi... - gi\|228945541\|ref\|ZP_04107891.1\| Cytidine deaminase [Bacillus thuringiensis serovar monterrey BGSC 4A... gi\|254741196 - gi\|254741196\|ref\|ZP_05198884.1\| cytidine deaminase [Bacillus anthracis str. Kruger B] gi\|254734795 - gi\|254734795\|ref\|ZP_05192507.1\| cytidine deaminase [Bacillus anthracis str. Western North America US... gi\|254721195 - gi\|254721195\|ref\|ZP_05182985.1\| cytidine deaminase [Bacillus anthracis str. A1055] gi\|254684491 - gi\|254684491\|ref\|ZP_05148351.1\| cytidine deaminase [Bacillus anthracis str. CNEVA-9066] gi\|254759985 - gi\|254759985\|ref\|ZP_05212009.1\| cytidine deaminase [Bacillus anthracis str. Australia 94] gi\|254755448 - gi\|254755448\|ref\|ZP_05207482.1\| cytidine deaminase [Bacillus anthracis str. Vollum] gi\|52143527, gi\|... - gi\|52143527\|ref\|YP_083301.1\| cytidine deaminase [Bacillus cereus E33L], gi\|51976996\|gb\|AAU18546.1\| c... gi\|49184769, gi\|... - gi\|49184769\|ref\|YP_028021.1\| cytidine deaminase [Bacillus anthracis str. Sterne], gi\|49178696\|gb\|AAT... gi\|49332706, gi\|... - gi\|49481150\|ref\|YP_036067.1\| cytidine deaminase [Bacillus thuringiensis serovar konkukian str. 97-27... gi\|30261929, gi\|... - gi\|30261929\|ref\|NP_844306.1\| cytidine deaminase [Bacillus anthracis str. Ames], gi\|30256555\|gb\|AAP25... gi\|47527190, gi\|... - gi\|47527190\|ref\|YP_018539.1\| cytidine deaminase [Bacillus anthracis str. 'Ames Ancestor'], gi\|475023...	1.0E-46	[1..131]	[1..131]
gi\|29897937, gi\|... - gi\|30022379\|ref\|NP_834010.1\| cytidine deaminase [Bacillus cereus ATCC 14579], gi\|29897937\|gb\|AAP1121... gi\|228980990, gi... - gi\|228980990\|ref\|ZP_04141293.1\| Cytidine deaminase [Bacillus thuringiensis Bt407], gi\|228778781\|gb\|E... gi\|228785447, gi... - gi\|228974397\|ref\|ZP_04134966.1\| Cytidine deaminase [Bacillus thuringiensis serovar thuringiensis str... gi\|228941466, gi... - gi\|228941466\|ref\|ZP_04104017.1\| Cytidine deaminase [Bacillus thuringiensis serovar berliner ATCC 107... gi\|228836686, gi... - gi\|228923053\|ref\|ZP_04086346.1\| Cytidine deaminase [Bacillus thuringiensis serovar huazhongensis BGS... gi\|218232971, gi... - gi\|218232971\|ref\|YP_002369108.1\| cytidine deaminase [Bacillus cereus B4264], gi\|218160928\|gb\|ACK6092... gi\|229152501, gi... - gi\|229152501\|ref\|ZP_04280693.1\| Cytidine deaminase [Bacillus cereus m1550], gi\|228631109\|gb\|EEK87746... gi\|229129578, gi... - gi\|229129578\|ref\|ZP_04258548.1\| Cytidine deaminase [Bacillus cereus BDRD-Cer4], gi\|228653895\|gb\|EEL0...	1.0E-46	[1..132]	[1..132]
gi\|52786456, gi\|... - gi\|52786456\|ref\|YP_092285.1\| hypothetical protein BLi02721 [Bacillus licheniformis ATCC 14580], gi\|5...	2.0E-46	[1..132]	[1..132]
gi\|47570605, gi\|... - gi\|47570605\|ref\|ZP_00241221.1\| cytidine deaminase [Bacillus cereus G9241], gi\|47552728\|gb\|EAL11163.1...	5.0E-46	[1..131]	[1..131]
gi\|242232286, gi... - gi\|242256209\|ref\|ZP_04801104.1\| cytidine deaminase [Thermoanaerobacter sp. X513], gi\|242232286\|gb\|EE... gi\|241903470, gi... - gi\|241903470\|ref\|ZP_04788193.1\| cytidine deaminase [Thermoanaerobacter brockii subsp. finnii Ako-1],... gi\|114805408, gi... - gi\|167039068\|ref\|YP_001662053.1\| cytidine deaminase [Thermoanaerobacter sp. X514], gi\|166853308\|gb\|A... gi\|76797042, gi\|... - gi\|76797042\|ref\|ZP_00779385.1\| Cytidine deaminase, homotetrameric [Thermoanaerobacter ethanolicus AT...	1.0E-45	[2..132]	[5..135]
gi\|20806970 - gi\|20806970\|ref\|NP_622141.1\| Cytidine deaminase [Thermoanaerobacter tengcongensis MB4] gi\|20806970, gi\|... - gi\|20806970\|ref\|NP_622141.1\| cytidine deaminase [Thermoanaerobacter tengcongensis MB4], gi\|20515450\|...	2.0E-45	[2..132]	[5..135]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSKQLIQEA IEARKQAYVP YSKFQVGAAL LTQDGKVYRG CNVENASYGL CNCAERTALF  60
   61 KAVSEGDKEF VAIAIVADTK RPVPPCGACR QVMVELCKQD TKVYLSNLHG DVQETTVGEL 120
  121 LPGAFLAEDL HE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.221849
Match:	2d30A
Description:	No description for 2d30A was found.

Predicted functions:

Term	Confidence	Notes
cytidine deaminase activity	4.42667374679603	bayes_pls_golite062009
deaminase activity	2.76997916054448	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	2.27736397496642	bayes_pls_golite062009
catalytic activity	1.70756445127105	bayes_pls_golite062009
binding	1.64474382695496	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.51294035758003	bayes_pls_golite062009
IMP cyclohydrolase activity	1.34771936728813	bayes_pls_golite062009
receptor binding	1.25331530291023	bayes_pls_golite062009
hydrolase activity	1.20889076546073	bayes_pls_golite062009
phosphoribosylaminoimidazolecarboxamide formyltransferase activity	1.06178740854563	bayes_pls_golite062009
nucleoside binding	0.66793245260795	bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity	0.36832789692523	bayes_pls_golite062009
cyclohydrolase activity	0.308525511259279	bayes_pls_golite062009
transition metal ion binding	0.25533482618887	bayes_pls_golite062009
protein binding	0.072557222523031	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	0.0520808212384716	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: