| Protein: | PTBP3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 432 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTBP3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
275.0 | [0..2] | [431..4] |
|
Region A: Residues: [1-82] |
1 11 21 31 41 51
| | | | | |
1 MAESSKVVHV RNVGHEISEN DLLQLFQPFG VITKLVMLRA KNQALLQMQD VSSAVSALQF 60
61 FTNVQPTIRG RNVYVQFSSH QE
|
| Detection Method: |  |
| Confidence: | 13.39794 |
| Match: | 2ad9A |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD1 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [83-232] |
1 11 21 31 41 51
| | | | | |
1 LTTIEQNIHG REDEPNRILL VTIHHMLYPI TVDVLHQVFS PYGFVEKLVT FQKSAGFQAL 60
61 IQYQVQQCAA SARTALQGRN IYDGCCQLDI QFSNLEELQV NYNNDRSRDY TNPNLPAEQK 120
121 GRSSHPCYGD TGVAYPQMAN TSAIAAAFGG
|
| Detection Method: | |
| Confidence: | 13.522879 |
| Match: | 1sjrA |
| Description: | NMR Structure of RRM2 from Human Polypyrimidine Tract Binding Protein Isoform 1 (PTB1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| snRNA binding | 3.28448936696877 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.26303528058407 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.23032741934624 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
| snoRNA binding | 0.0568636182001701 | bayes_pls_golite062009 |
|
Region A: Residues: [233-432] |
1 11 21 31 41 51
| | | | | |
1 GLPPGITGTN DRCTVLVSNL NADSIDEDKL FNLFSLYGNI VRIKLLRNKP DHALVQMGDG 60
61 FQAELAVHFL KGAMLFGKRL EVNFSKHPNI TPGTDSHDYV NSNLNRFNRN AAKNYRYCCS 120
121 PTKMIHLSTL PQDVTEEEVM NHVQEHGAVV NTKVFEMNGK KQALVQFENE EEAAEALVCK 180
181 HATSLGGSII RISFSQLQTI
|
| Detection Method: | |
| Confidence: | 36.0 |
| Match: | 2adcA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| snRNA binding | 3.28448936696877 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.26303528058407 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.23032741934624 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
| snoRNA binding | 0.0568636182001701 | bayes_pls_golite062009 |
