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View Structure Prediction Details

Protein: gi|37528462, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 246 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37528462, gi|....

Description E-value Query
Range
Subject
Range
gi|71489436, gi|... - gi|71544542|ref|ZP_00665566.1| Uroporphyrin-III C-methyltransferase, C-terminal [Syntrophobacter fum...
242.0 [0..2] [245..255]

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Predicted Domain #1
Region A:
Residues: [1-246]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILVTRPAP AGEELVRRLQ AAGKTAFSAP LINIHPGSEL PQLAEKLNPL NTRDMVFLLS  60
   61 KNAVYYANNQ LNKINLSWPD KLIYYAIGRS TALAFHQLTG MNVIWSSEGE TSEILLKLPS 120
  121 LHQVENKQAL LLRGNGGREL IARTLTERGA TVDYCECYFR QPVDYPAAEF SAHWQKYGVQ 180
  181 TLVVTSGEIL QLLYNLIPES DRNRWLLHCR LIVVSERLAH AARNLGWQDV KVAKSADNDA 240
  241 LIQALE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.0
Match: 1jr2A
Description: Uroporphyrinogen III synthase (U3S, HemD)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
uroporphyrinogen-III synthase activity 3.19339392327514 bayes_pls_golite062009
catalytic activity 1.50868196926865 bayes_pls_golite062009
hydro-lyase activity 0.850411184249311 bayes_pls_golite062009
lyase activity 0.0536528882085157 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle