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View Structure Prediction Details

Protein: gi|36786112, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 273 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36786112, gi|....

Description E-value Query
Range
Subject
Range
gi|78066160, gi|... - gi|78066160|ref|YP_368929.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Bu...
235.0 [0..1] [271..3]

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Predicted Domain #1
Region A:
Residues: [1-273]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKKIILVGL FMLLAGCSSL EDRGAYKVDS SFPSQGQNDR VRFLVFHYTA VDDKDSLRIL  60
   61 TQGGVSAHYL IPSLPNYVRG KPVILQLVPE EKRAWHAGVS GWNGRKDLND TSIGIEIVNK 120
  121 GFTEMLLEKE WYPFNEQQID LLTRLAKDII QRYGIEPINV VGHSDIAPLR KYDPGKLFPW 180
  181 KNLAEQGIGA WPEDATVEKY MAGRKWHDKA SVELIQKTLA KYGYTIPQTG VLDEDTRKTI 240
  241 SAFQMHFRPD DISGNPDAQT ESIALALVEK YKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.0
Match: 2bgxA
Description: No description for 2bgxA was found.

Predicted functions:

Term Confidence Notes
N-acetylmuramoyl-L-alanine amidase activity 5.29207604418857 bayes_pls_golite062009
peptidoglycan binding 5.10635543502728 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 3.20235326428146 bayes_pls_golite062009
N-acetyl-anhydromuramoyl-L-alanine amidase activity 1.8723848738588 bayes_pls_golite062009
pattern binding 1.3169647365105 bayes_pls_golite062009
hydrolase activity 1.08510134637257 bayes_pls_golite062009
catalytic activity 0.628556091191359 bayes_pls_golite062009
receptor activity 0.165305685738616 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle