YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|36785292, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36785292, gi|....

Description	E-value	Query Range	Subject Range
gi\|229897931, gi... - gi\|229897931\|ref\|ZP_04513082.1\| flagellar motor switch protein FliN [Yersinia pestis biovar Oriental... gi\|229693541, gi... - gi\|229897204\|ref\|ZP_04512360.1\| flagellar motor switch protein FliN [Yersinia pestis biovar Oriental... gi\|229701190, gi... - gi\|229896267\|ref\|ZP_04511437.1\| flagellar motor switch protein FliN [Yersinia pestis Pestoides A], g... gi\|149366230, gi... - gi\|149366230\|ref\|ZP_01888265.1\| flagellar motor switch protein FliN [Yersinia pestis CA88-4125], gi\|... gi\|165925955, gi... - gi\|165925955\|ref\|ZP_02221787.1\| flagellar motor switch protein FliN [Yersinia pestis biovar Oriental... gi\|166010928, gi... - gi\|166010928\|ref\|ZP_02231826.1\| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua ... gi\|21959352, gi\|... - gi\|22126367\|ref\|NP_669790.1\| flagellar motor switch protein FliN [Yersinia pestis KIM], gi\|21959352\|... gi\|25300771 - pir\|\|AD0222 flagellar motor switch protein FliN [imported] - Yersinia pestis (strain CO92) gi\|16122075, gi\|... - gi\|218928943\|ref\|YP_002346818.1\| flagellar motor switch protein FliN [Yersinia pestis CO92], gi\|1612... gi\|45441388, gi\|... - gi\|45441388\|ref\|NP_992927.1\| flagellar motor switch protein FliN [Yersinia pestis biovar Microtus st... gi\|229902838, gi... - gi\|229902838\|ref\|ZP_04517955.1\| flagellar motor switch protein FliN [Yersinia pestis Nepal516], gi\|2... gi\|108807194, gi... - gi\|108807194\|ref\|YP_651110.1\| flagellar motor switch protein FliN [Yersinia pestis Antiqua], gi\|1087... gi\|165938705, gi... - gi\|89105452\|ref\|ZP_01177971.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [Y... gi\|166208307, gi... - gi\|166211127\|ref\|ZP_02237162.1\| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua ... gi\|167049470, gi... - gi\|167401081\|ref\|ZP_02306584.1\| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua ... gi\|166961682, gi... - gi\|167419987\|ref\|ZP_02311740.1\| flagellar motor switch protein FliN [Yersinia pestis biovar Oriental... gi\|167055170, gi... - gi\|167425771\|ref\|ZP_02317524.1\| flagellar motor switch protein FliN [Yersinia pestis biovar Mediaeva... gi\|167467511 - gi\|167467511\|ref\|ZP_02332215.1\| flagellar motor switch protein FliN [Yersinia pestis FV-1]	133.0	[0..1]	[139..1]

Back

Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDAKQPTDT AATGSAEDMW AEALEQQAAQ QQTSDSSAAI FESLEPQDAL AHLSDIDLIL  60
   61 DIPVKLSVEL GRTKMTIKQL LRLSQGSVVS LDGLAGEPLD ILINGYLIAQ GEVVVVSDKY 120
  121 GIRITDIITP SERMRRLSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.09691
Match:	1o6aA
Description:	Crystal structure of the c-terminal fragment of the putative flagelar motor switch protein FliN (TM0680a) from Thermotoga maritima at 1.85 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
motor activity	3.07201707618408	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.17271522721174	bayes_pls_golite062009
pyrophosphatase activity	1.12849207458848	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.10878539079436	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.10781034885807	bayes_pls_golite062009
binding	0.851616221377121	bayes_pls_golite062009
hydrolase activity	0.325371951256	bayes_pls_golite062009
protein binding	0.253452523212299	bayes_pls_golite062009
catalytic activity	0.145477743192426	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: