YRC Public Data Repository - Protein Structure Prediction

Protein:	RSMA_PHOLL
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSMA_PHOLL.

Description	E-value	Query Range	Subject Range
RSMA_YERPG - Ribosomal RNA small subunit methyltransferase A OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rs... gi\|166008750, gi... - gi\|166008750\|ref\|ZP_02229648.1\| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str. E... gi\|165919942, gi... - gi\|165928081\|ref\|ZP_02223913.1\| dimethyladenosine transferase [Yersinia pestis biovar Orientalis str... gi\|229705868, gi... - gi\|229836925\|ref\|ZP_04457090.1\| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Ye... gi\|167401583, gi... - gi\|167401583\|ref\|ZP_02307077.1\| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str. U... gi\|229696746, gi... - gi\|229840380\|ref\|ZP_04460539.1\| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Ye... gi\|166212108, gi... - gi\|166212108\|ref\|ZP_02238143.1\| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str. B... gi\|229690770, gi... - gi\|229842460\|ref\|ZP_04462615.1\| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Ye... gi\|167426031, gi... - gi\|167426031\|ref\|ZP_02317784.1\| dimethyladenosine transferase [Yersinia pestis biovar Mediaevalis st... gi\|166960157, gi... - gi\|167422020\|ref\|ZP_02313773.1\| dimethyladenosine transferase [Yersinia pestis biovar Orientalis str... gi\|22127557, gi\|... - gi\|22127557\|ref\|NP_670980.1\| dimethyladenosine transferase [Yersinia pestis KIM], gi\|21960661\|gb\|AAM... gi\|218927690, gi... - gi\|218927690\|ref\|YP_002345565.1\| dimethyladenosine transferase [Yersinia pestis CO92], gi\|16120822\|r... gi\|45438288, gi\|... - gi\|45443419\|ref\|NP_994958.1\| dimethyladenosine transferase [Yersinia pestis biovar Microtus str. 910... gi\|165914189, gi... - gi\|89102169\|ref\|ZP_01174824.1\| COG0030: Dimethyladenosine transferase (rRNA methylation) [Yersinia p... RSMA_YERPA - Ribosomal RNA small subunit methyltransferase A OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=r... RSMA_YERPN - Ribosomal RNA small subunit methyltransferase A OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=... RSMA_YERPE - Ribosomal RNA small subunit methyltransferase A OS=Yersinia pestis GN=rsmA PE=3 SV=1 gi\|149289879, gi... - gi\|150260471\|ref\|ZP_01917199.1\| dimethyladenosine transferase [Yersinia pestis CA88-4125], gi\|149289... RSMA_YERPP - Ribosomal RNA small subunit methyltransferase A OS=Yersinia pestis (strain Pestoides F) GN=rsmA PE=3...	250.0	[0..1]	[271..1]

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Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRVHQGHF ARKRFGQNFL TDQFVIDSIA AAINPQPGQA VLEIGPGLGA LTEPVGERMD  60
   61 KMTVVELDRD LAARLQVHPQ LKDKLTIIQQ DAMTVNFGEL SQQRGKPLRV FGNLPYNIST 120
  121 PLMFHLFSYT DAIADMHFML QKEVVNRLVA GPGSKTFGRL SVMAQYYCQV IPVLEVPPTA 180
  181 FTPAPKVDSA VVRLVPHKSI PHPVKNIRML SRITTQAFNQ RRKTIRNSLG DLFTVEQLTE 240
  241 LGIDPSTRAE NISVEQYCKM ANWLSEQPEM QS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	1qyrA
Description:	2.1 Angstrom Crystal structure of KsgA: A Universally Conserved Adenosine Dimethyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.15445027778357	bayes_pls_golite062009
rRNA methyltransferase activity	4.09362182773099	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.07153733729662	bayes_pls_golite062009
N-methyltransferase activity	3.67177992319602	bayes_pls_golite062009
protein methyltransferase activity	3.5512266163483	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.39429041855776	bayes_pls_golite062009
RNA methyltransferase activity	3.07428840534971	bayes_pls_golite062009
histone methyltransferase activity	2.49492581548369	bayes_pls_golite062009
transferase activity	2.22303238506686	bayes_pls_golite062009
DNA-methyltransferase activity	2.14498896320526	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	2.06652984530965	bayes_pls_golite062009
arginine N-methyltransferase activity	2.06652984530965	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	1.83964463328968	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.75675289134467	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	1.63076727020333	bayes_pls_golite062009
transcription regulator activity	1.42049721553167	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	1.26493190370687	bayes_pls_golite062009
catalytic activity	1.25333584501255	bayes_pls_golite062009
tRNA methyltransferase activity	1.12859857407629	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	1.10713374933008	bayes_pls_golite062009
DNA binding	1.03011331296251	bayes_pls_golite062009
nucleic acid binding	0.731396842794323	bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific)	0.720411427168235	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.703178429468566	bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity	0.606920378432989	bayes_pls_golite062009
binding	0.546744797014504	bayes_pls_golite062009
mitochondrial transcription initiation factor activity	0.481383105532041	bayes_pls_golite062009
tRNA (cytosine-5-)-methyltransferase activity	0.299393192819978	bayes_pls_golite062009
tRNA (cytosine)-methyltransferase activity	0.299393192819978	bayes_pls_golite062009
rRNA (guanine-N1-)-methyltransferase activity	0.234572322347698	bayes_pls_golite062009
rRNA (uridine-2'-O-)-methyltransferase activity	0.188049877065151	bayes_pls_golite062009
transcription factor binding	0.149382105526243	bayes_pls_golite062009
rRNA (uridine) methyltransferase activity	0.130647573658872	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: