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View Structure Prediction Details

Protein: gi|29294063, gi|...
Organism: Arabidopsis thaliana
Length: 573 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29294063, gi|....

Description E-value Query
Range
Subject
Range
gi|2208903, gi|1... - gi|2208903|dbj|BAA20519.1| ascorbate oxidase [Arabidopsis thaliana], pir||T44928 L-ascorbate oxidase...
444.0 [0..8] [572..1]

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Predicted Domain #1
Region A:
Residues: [1-573]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVIVWWLLT VVVVAFHSAS AAVVESTWEV EYKYWWPDCK EGIVMAINGQ FPGPTIDAVA  60
   61 GDTVIIHVVN KLSTEGVVIH WHGIRQKGTP WADGAAGVTQ CPINPGETFT YKFIVDKAGT 120
  121 HFYHGHYGMQ RSSGLYGMLI VRSPKERLIY DGEFNLLLSD WWHQSIHAQE LALSSRPMRW 180
  181 IGEPQSLLIN GRGQFNCSQA AYFNKGGEKD VCTFKENDQC APQTLRVEPN RVYRLRIAST 240
  241 TALASLNLAV QGHQLVVVEA DGNYVAPFTV NDIDVYSGET YSVLLKTNAL PSKKYWISVG 300
  301 VRGREPKTPQ ALTVINYVDA TESRPSHPPP VTPIWNDTDR SKSFSKKIFA AKGYPKPPEK 360
  361 SHDQLILLNT QNLYEDYTKW SINNVSLSVP VTPYLGSIRY GLKSAYDLKS PAKKLIMDNY 420
  421 DIMKPPPNPN TTKGSGIYNF AFGIVVDVIL QNANVLKGVI SEIHPWHIHG HDFWVLGYGE 480
  481 GKFKPGIDEK TFNLKNPPLR NTVVLYPFGW TAIRFVTDNP GVWFFHCHIE PHLHMGMGVV 540
  541 FVEGVDRIGK MEIPDEALGC GLTRKWLMNR GRP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 113.0
Match: 1aozA
Description: Ascorbate oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrogen ion transmembrane transporter activity 5.98463819317772 bayes_pls_golite062009
cation transmembrane transporter activity 4.80679334235027 bayes_pls_golite062009
ion transmembrane transporter activity 4.70382790500795 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 4.35501871300326 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 4.30470923318097 bayes_pls_golite062009
oxidoreductase activity, oxidizing metal ions 3.53140025783418 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 3.4840258390283 bayes_pls_golite062009
copper ion binding 3.27145156911424 bayes_pls_golite062009
transition metal ion transmembrane transporter activity 2.9428517783106 bayes_pls_golite062009
metal ion transmembrane transporter activity 2.82570802206273 bayes_pls_golite062009
transporter activity 2.75690053147562 bayes_pls_golite062009
copper ion transmembrane transporter activity 2.70015092777938 bayes_pls_golite062009
transmembrane transporter activity 2.67027550825653 bayes_pls_golite062009
substrate-specific transporter activity 2.42871678736924 bayes_pls_golite062009
oxidoreductase activity, oxidizing metal ions, oxygen as acceptor 2.11615717093435 bayes_pls_golite062009
ferroxidase activity 2.11615717093435 bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity 1.88441243755534 bayes_pls_golite062009
oxidoreductase activity 1.49034416929059 bayes_pls_golite062009
iron ion transmembrane transporter activity 1.17954317549442 bayes_pls_golite062009
binding 1.14851914699653 bayes_pls_golite062009
heme-copper terminal oxidase activity 0.379596275876029 bayes_pls_golite062009
catalytic activity 0.363071622766357 bayes_pls_golite062009
metal ion binding 0.305777337672225 bayes_pls_golite062009
cation binding 0.305777337672225 bayes_pls_golite062009
ion binding 0.300057966011705 bayes_pls_golite062009
active transmembrane transporter activity 0.269767937058687 bayes_pls_golite062009
transition metal ion binding 0.262778393547427 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 0.222255654263847 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors 0.222255654263847 bayes_pls_golite062009
cytochrome-c oxidase activity 0.222255654263847 bayes_pls_golite062009
protein binding 0.19183671060378 bayes_pls_golite062009
receptor binding 0.0601969032951899 bayes_pls_golite062009
molecular transducer activity 0.049534674746601 bayes_pls_golite062009
signal transducer activity 0.049534674746601 bayes_pls_golite062009
primary active transmembrane transporter activity 0.0246677473353576 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle