| Protein: | gi|27754467, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 458 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27754467, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
288.0 | [0..1] | [458..1] |
|
Region A: Residues: [1-132] |
1 11 21 31 41 51
| | | | | |
1 MDSTAATKRV VDPLTVGSAF VNQYYYIFCN MPEHLPRFYQ EISRVGRVGQ DGVMRDFSTF 60
61 QGISEELKRL TYGDCNSAEI TSYDTQESHN GGFLLFVTGY FTLNERSRRK FTQTFFLAPQ 120
121 EKGFFVLNDI LR
|
| Detection Method: |  |
| Confidence: | 37.0 |
| Match: | 1a2kA |
| Description: | Nuclear transport factor-2 (NTF2) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.74084472095013 | bayes_pls_golite062009 |
| binding | 1.29138202593822 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.983337869604082 | bayes_pls_golite062009 |
| kinase activity | 0.871357091497469 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.797931524291551 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.662760637049546 | bayes_pls_golite062009 |
| protein kinase activity | 0.622060011038738 | bayes_pls_golite062009 |
| transporter activity | 0.55283159394909 | bayes_pls_golite062009 |
| protein transporter activity | 0.300724614509129 | bayes_pls_golite062009 |
| transferase activity | 0.250005906709975 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0725168535072961 | bayes_pls_golite062009 |
|
Region A: Residues: [133-216] |
1 11 21 31 41 51
| | | | | |
1 FVNDDAKDNV PETIDGEVVS GINSTTPTII NGMKGSEQAA CVSVNPVCKE VSKPLDNENA 60
61 KDNVLVPEIA NEVARTEITC KEVA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [217-458] |
1 11 21 31 41 51
| | | | | |
1 DDSQKNYDPD DGLADAPKKS YASVLKVTKD KFGVPAVSLP SPKKIPKDQE HQAPSDPSTG 60
61 QILKDQGQQA SSDPSQVIES DTVSESVDAS ENGHNQEAVA EGTSIYVRHL PFNANIDMLE 120
121 AEFKQFGAIT NGGIQVINQR GLGYPYGFVE FEEADAAHRA IEASPVKIGG LRAFVEEKLS 180
181 TSRGKRGNGN VGYGNRNVGV GMRGRGSYGY GYDYRRGGRG PGGGGRSFNR RGNEYVASIN 240
241 SY
|
| Detection Method: | |
| Confidence: | 40.30103 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.43517729895315 | bayes_pls_golite062009 |
| binding | 2.41127885655304 | bayes_pls_golite062009 |
| RNA binding | 1.96321378335448 | bayes_pls_golite062009 |
| protein binding | 1.52056358240529 | bayes_pls_golite062009 |
| mRNA binding | 0.79383576791259 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.681978520687901 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.494091580976874 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.257073928625242 | bayes_pls_golite062009 |
