| Protein: | VSR1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 623 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VSR1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
463.0 | [0..1] | [614..4] |
|
Region A: Residues: [1-182] |
1 11 21 31 41 51
| | | | | |
1 MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV 60
61 VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF TLKAWIAQQA GAAAILVADS 120
121 KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP 180
181 HP
|
| Detection Method: |  |
| Confidence: | 10.0 |
| Match: | 1xf1A |
| Description: | Structure of C5a peptidase- a key virulence factor from Streptococcus |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [183-623] |
1 11 21 31 41 51
| | | | | |
1 DERVEYELWT NSNDECGKKC DTQIEFLKNF KGAAQILEKG GHTQFTPHYI TWYCPEAFTL 60
61 SKQCKSQCIN HGRYCAPDPE QDFTKGYDGK DVVVQNLRQA CVYRVMNDTG KPWVWWDYVT 120
121 DFAIRCPMKE KKYTKECADG IIKSLGIDLK KVDKCIGDPE ADVENPVLKA EQESQIGKGS 180
181 RGDVTILPTL VVNNRQYRGK LEKGAVLKAM CSGFQESTEP AICLTEDLET NECLENNGGC 240
241 WQDKAANITA CRDTFRGRLC ECPTVQGVKF VGDGYTHCKA SGALHCGINN GGCWRESRGG 300
301 FTYSACVDDH SKDCKCPLGF KGDGVKNCED VDECKEKTVC QCPECKCKNT WGSYECSCSN 360
361 GLLYMREHDT CIGSGKVGTT KLSWSFLWIL IIGVGVAGLS GYAVYKYRIR SYMDAEIRGI 420
421 MAQYMPLESQ PPNTSGHHMD I
|
| Detection Method: | |
| Confidence: | 27.39794 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.286076792172079 | bayes_pls_golite062009 |
| protein binding | 0.14494900666454 | bayes_pls_golite062009 |
