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Protein Overview: VSR1_ARATH

General Information:
Name(s) found: VSR1_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 623 amino acids

    Gene Ontology:
    Cellular Component: integral to plasma membrane [ISS]
    Golgi transport complex [IPI]
    trans-Golgi network [IDA][TAS]
    Golgi apparatus [IDA]
    plasma membrane [IDA][IEP][ISS]
    Biological Process: vacuolar transport [IMP]
    protein targeting to vacuole [IMP][ISS][TAS]
    Golgi to vacuole transport [IDA][ISS]
    Molecular Function: amino-terminal vacuolar sorting propeptide binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV  60
   61 VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF TLKAWIAQQA GAAAILVADS 120
  121 KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP 180
  181 HPDERVEYEL WTNSNDECGK KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF 240
  241 TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY 300
  301 VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK 360
  361 GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST EPAICLTEDL ETNECLENNG 420
  421 GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR 480
  481 GGFTYSACVD DHSKDCKCPL GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC 540
  541 SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR 600
  601 GIMAQYMPLE SQPPNTSGHH MDI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..182] PSI-BLAST 10.0 Structure of C5a peptidase- a key virulence factor from Streptococcus
    2 View Details [183..623] PSI-BLAST 27.39794 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.286076792172079 bayes_pls_golite062009
  • protein binding
    		•  0.14494900666454 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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