YRC Public Data Repository - Protein Structure Prediction

Protein:	SMU1_ARATH
Organism:	Arabidopsis thaliana
Length:	511 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMU1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	454.0	[0..44]	[510..804]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	449.0	[0..92]	[510..723]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	447.0	[0..33]	[510..1011]
gi\|106891559, gi... - gi\|148655047\|ref\|YP_001275252.1\| WD-40 repeat-containing protein [Roseiflexus sp. RS-1], gi\|14856715...	444.0	[0..61]	[509..191]
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	441.0	[0..42]	[510..1276]
gi\|116200089, gi... - gi\|88179479\|gb\|EAQ86947.1\| hypothetical protein CHGG_08200 [Chaetomium globosum CBS 148.51], gi\|1162...	438.0	[0..55]	[510..879]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL  60
   61 PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT QVMGVMKQEQ AERYLRMEHL 120
  121 LVRSYF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.522879
Match:	1uujA
Description:	N-terminal domain of Lissencephaly-1 protein (Lis-1)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [127-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPHEAYGDST KERKRAQIAQ AVAAEVTVVP PSRLMALIGQ ALKWQQHQGL LPPGTQFDLF  60
   61 RGTAAMKQDV EDTHP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [202-511]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVLTHTIKFG KKSHAECARF SPDGQFLASS SVDGFIEVWD YISGKLKKDL QYQADESFMM  60
   61 HDDPVLCIDF SRDSEMLASG SQDGKIKIWR IRTGVCIRRF DAHSQGVTSL SFSRDGSQLL 120
  121 STSFDQTARI HGLKSGKLLK EFRGHTSYVN HAIFTSDGSR IITASSDCTV KVWDSKTTDC 180
  181 LQTFKPPPPL RGTDASVNSI HLFPKNTEHI VVCNKTSSIY IMTLQGQVVK SFSSGNREGG 240
  241 DFVAACVSTK GDWIYCIGED KKLYCFNYQS GGLEHFMMVH EKDVIGITHH PHRNLLATYS 300
  301 EDCTMKLWKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.69897
Match:	2gnqA
Description:	No description for 2gnqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits