YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30692988, gi\|...
Organism:	Arabidopsis thaliana
Length:	379 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30692988, gi|....

Description	E-value	Query Range	Subject Range
E2FE_ARATH - E2F transcription factor-like E2FE OS=Arabidopsis thaliana GN=E2FE PE=2 SV=1	332.0	[0..1]	[377..1]
gi\|56104624 - gi\|56104624\|gb\|AAH86675.1\| E2F transcription factor 8 [Mus musculus]	312.0	[0..1]	[378..67]
gi\|109462002, gi... - gi\|149055799\|gb\|EDM07230.1\| E2F transcription factor 8 [Rattus norvegicus], gi\|109462002\|ref\|XP_0010...	308.0	[0..1]	[378..67]
gi\|114636537, gi... - gi\|114636537\|ref\|XP_001173623.1\| PREDICTED: E2F family member 8 isoform 2 [Pan troglodytes], gi\|1146...	303.0	[0..1]	[378..67]
E2F8 - E2F transcription factor 8	300.0	[0..1]	[378..67]
gi\|109107036, gi... - gi\|109107038\|ref\|XP_001095199.1\| PREDICTED: similar to E2F family member 8 isoform 2 [Macaca mulatta...	300.0	[0..1]	[378..67]
gi\|73988917 - gi\|73988917\|ref\|XP_534087.2\| PREDICTED: similar to E2F family member 8 [Canis familiaris]	294.0	[0..1]	[378..67]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLSPERFK LAVTSPSSIP ESSSALQLHH SYSRKQKSLG LLCTNFLALY NREGIEMVGL  60
   61 DDAASKLGVE RRRIYDIVNV LESVGVLTRR AKNQYTWKGF SAIPGALKEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	1cf7A
Description:	Cell cycle transcription factor E2F-4
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [111-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEEGVKDTFH RFYVNENVKG SDDEDDDEES SQPHSSSQTD SSKPGSLPQS SDPS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [165-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KIDNRREKSL GLLTQNFIKL FICSEAIRII SLDDAAKLLL GDAHNTSIMR TKVRRLYDIA  60
   61 NVLSSMNLIE KTHTLDSRKP AFKWLGYNGE PTFTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.045757
Match:	1cf7B
Description:	Cell cycle transcription factor DP-2
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [260-379]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSDLLQLESR KRAFGTDITN VNVKRSKSSS SSQENATERR LKMKKHSTPE SSYNKSFDVH  60
   61 ESRHGSRGGY HFGPFAPGTG TYPTAGLEDN SRRAFDVENL DSDYRPSYQN QGAYILFTSI 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.0
Match:	2azeB
Description:	Structure of the Rb C-terminal domain bound to an E2F1-DP1 heterodimer
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits