| Protein: | TF2B_ORYSJ |
| Organism: | Oryza sativa Japonica Group |
| Length: | 312 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TF2B_ORYSJ.
| Description | E-value | Query Range |
Subject Range |
|
|
255.0 | [0..1] | [312..1] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MSDSFCPDCK KHTEVAFDHS AGDTVCTECG LVLEAHSVDE TSEWRTFANE SSDNDPVRVG 60
61 GPTNPLLTDG GLSTVIAKPN
|
| Detection Method: |  |
| Confidence: | 2.88 |
| Match: | 1rlyA |
| Description: | RDC-derived models of the zinc ribbon domain of human general transcription TFIIB (zinc bound structures) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 5.56373197054355 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 4.94644536450092 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 4.00205139503916 | bayes_pls_golite062009 |
| RNA polymerase activity | 4.00205139503916 | bayes_pls_golite062009 |
| transcription regulator activity | 3.26689775782701 | bayes_pls_golite062009 |
| nucleic acid binding | 2.22680674586367 | bayes_pls_golite062009 |
| binding | 2.0546846758949 | bayes_pls_golite062009 |
| DNA binding | 2.01468878668039 | bayes_pls_golite062009 |
| positive transcription elongation factor activity | 1.49227692053981 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.48570514124545 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 1.10975425818967 | bayes_pls_golite062009 |
| protein binding | 0.549662583711205 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.536637459961958 | bayes_pls_golite062009 |
| DNA primase activity | 0.494157804587957 | bayes_pls_golite062009 |
| catalytic activity | 0.433059249914853 | bayes_pls_golite062009 |
| RNA polymerase II transcription elongation factor activity | 0.0384907163875292 | bayes_pls_golite062009 |
|
Region A: Residues: [81-312] |
1 11 21 31 41 51
| | | | | |
1 GAQGEFLSSS LGRWQNRGSN PDRSLILAFR TIANMADRLG LVATIKDRAN EIYKKVEDLK 60
61 SIRGRNQDAI LAACLYIACR QEDRPRTVKE ICSVANGATK KEIGRAKEFI VKQLEVEMGQ 120
121 SMEMGTIHAG DFLRRFCSTL GMNNQAVKAA QEAVQRSEEL DIRRSPISIA AAVIYMITQL 180
181 SDDKKPLKDI SLATGVAEGT IRNSYKDLYP YASRLIPNTY AKEEDLKNLC TP
|
| Detection Method: | |
| Confidence: | 34.221849 |
| Match: | 1c9bA |
| Description: | Transcription factor IIB (TFIIB), core domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 6.34389570239956 | bayes_pls_golite062009 |
| cyclin-dependent protein kinase regulator activity | 3.19553060844126 | bayes_pls_golite062009 |
| protein kinase regulator activity | 2.87088741581791 | bayes_pls_golite062009 |
| transcription regulator activity | 2.795846725429 | bayes_pls_golite062009 |
| binding | 2.4204867358489 | bayes_pls_golite062009 |
| nucleic acid binding | 2.04886889839181 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.00665312545368 | bayes_pls_golite062009 |
| DNA binding | 1.94297811210385 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.69439693414478 | bayes_pls_golite062009 |
| kinase regulator activity | 1.65109787211976 | bayes_pls_golite062009 |
| protein binding | 1.47106731485576 | bayes_pls_golite062009 |
| transcription factor activity | 1.21921365719206 | bayes_pls_golite062009 |
| transcription factor binding | 0.749278791251235 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.729629809946521 | bayes_pls_golite062009 |
| positive transcription elongation factor activity | 0.42590121577004 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.138191616709499 | bayes_pls_golite062009 |
| transcription activator activity | 0.0696060248241566 | bayes_pls_golite062009 |
