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View Structure Prediction Details

Protein: gi|20334820, gi|...
Organism: Arabidopsis thaliana
Length: 421 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20334820, gi|....

Description E-value Query
Range
Subject
Range
gi|67662546, gi|... - gi|67662546|ref|ZP_00459834.1| Fumarylacetoacetase [Burkholderia cenocepacia HI2424], gi|67103863|gb...
474.0 [0..2] [420..13]

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Predicted Domain #1
Region A:
Residues: [1-421]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLKSFIDV GSDSHFPIQN LPYGVFKPES NSTPRPAVAI GDLVLDLSAI SEAGLFDGLI  60
   61 LKDADCFLQP NLNKFLAMGR PAWKEARSTL QRILSSNEPI LRDNDVLRRK SFHQMSKVEM 120
  121 IVPMVIGDYT DFFASMHHAK NCGLMFRGPE NAINPNWFRL PIAYHGRASS IVISGTDIIR 180
  181 PRGQGHPQGN SEPYFGPSKK LDFELEMAAV VGPGNELGKP IDVNNAADHI FGLLLMNDWS 240
  241 ARDIQAWEYV PLGPFLGKSF GTTISPWIVT LDALEPFGCQ APKQDPPPLP YLAEKESVNY 300
  301 DISLEVQLKP SGRDDSCVIT KSNFQNLYWT ITQQLAHHTV NGCNLRPGDL LGTGTISGPE 360
  361 PDSYGCLLEL TWNGQKPLSL NGTTQTFLED GDQVTFSGVC KGDGYNVGFG TCTGKIVPSP 420
  421 P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 130.0
Match: 1qqjA
Description: Fumarylacetoacetate hydrolase, FAH, N-terminal domain; Fumarylacetoacetate hydrolase, FAH, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity, acting on acid carbon-carbon bonds 3.91949440356496 bayes_pls_golite062009
hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances 3.81877470867258 bayes_pls_golite062009
fumarylacetoacetase activity 3.73784156823927 bayes_pls_golite062009
catalytic activity 1.43840931606572 bayes_pls_golite062009
binding 0.945020682808578 bayes_pls_golite062009
protein binding 0.211409325631147 bayes_pls_golite062009
hydrolase activity 0.00641900361184404 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle