YRC Public Data Repository - Protein Structure Prediction

Protein:	SUGP1_ARATH
Organism:	Arabidopsis thaliana
Length:	443 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUGP1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|114586983 - gi\|114586983\|ref\|XP_001167117.1\| PREDICTED: RNA binding motif protein 5 isoform 1 [Pan troglodytes]	215.0	[0..27]	[433..417]
gi\|109039569 - gi\|109039569\|ref\|XP_001104965.1\| PREDICTED: RNA binding motif protein 5 isoform 6 [Macaca mulatta] gi\|114586971 - gi\|114586971\|ref\|XP_001167529.1\| PREDICTED: RNA binding motif protein 5 isoform 8 [Pan troglodytes]	214.0	[0..27]	[433..418]
gi\|4678941, gi\|1... - gi\|4678941\|emb\|CAB41332.1\| gamma response I protein [Arabidopsis thaliana], pir\|\|T49091 gamma respon...	210.0	[0..1]	[443..653]
gi\|1244404 - gi\|1244404\|gb\|AAA99715.1\| putative tumor suppressor	208.0	[0..27]	[433..418]
RBM5_BOVIN - RNA-binding protein 5 OS=Bos taurus GN=RBM5 PE=2 SV=1	205.0	[0..27]	[433..418]
RBM5_MOUSE - RNA-binding protein 5 OS=Mus musculus GN=Rbm5 PE=1 SV=1	205.0	[0..27]	[433..418]
RBM5_RAT - RNA-binding protein 5 OS=Rattus norvegicus GN=Rbm5 PE=1 SV=1	204.0	[0..27]	[433..418]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKGAPPSIF VNDGSFMERF RQLQQEKDKD KDKVVQVEDS KPVKIISNPK PAANKISIGL  60
   61 KPNDAQKKGG KLAFSLKQKS KLLAPPVKLG TEEDEDDEDV KHEQGFGSVK RQKLEQRDTP 120
  121 VKSAKVSDVA P

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [132-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPSDPTVKK VADKLASFVA KHGRPFEHIT RQKNPGDTPF KFLFDENCAD YKYYVFRLAE  60
   61 EEKLISQTKD SGVLHSGDAG SR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.39794
Match:	1x4oA
Description:	Solution structure of SURP domain in splicing factor 4
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [214-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSTAAIPLQK PAYQQTGYQI PASALYDTPV EPGASSRSAQ ASITRPSDSD SFSGPRGADP  60
   61 LSMMEFYMKK AAQEEKMRRP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [294-443]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQSKDEMPPP ASLQGPSETS STDPGKRGHH MGDYIPLEEL DKFLSKCNDA AAQKATKEAA  60
   61 EKAKIQADNV GHKLLSKMGW KEGEGIGSSR KGMADPIMAG DVKTNNLGVG ASAPGEVKPE 120
  121 DDIYEQYKKR MMLGYKHRPN PLGNPRKAYY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits