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View Structure Prediction Details

Protein: SLU7A_ARATH
Organism: Arabidopsis thaliana
Length: 535 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLU7A_ARATH.

Description E-value Query
Range
Subject
Range
gi|18408333 - gi|18408333|ref|NP_564859.1| SMP1 (swellmap 1); nucleic acid binding [Arabidopsis thaliana]
664.0 [0..1] [535..1]
SLU7_ORYSI - Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica GN=OsI_27673 PE=3 SV=2
SLU7_ORYSJ - Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1
638.0 [0..1] [535..1]
gi|73954102 - gi|73954102|ref|XP_536446.2| PREDICTED: similar to step II splicing factor SLU7 [Canis familiaris]
627.0 [0..1] [535..67]
gi|76623713 - gi|76623713|ref|XP_883739.1| PREDICTED: similar to step II splicing factor SLU7 isoform 3 [Bos tauru...
617.0 [0..1] [535..20]
gi|123980268, gi... - gi|123995081|gb|ABM85142.1| step II splicing factor SLU7 [synthetic construct], gi|123980268|gb|ABM8...
gi|14714952 - gi|14714952|gb|AAH10634.1| SLU7 splicing factor homolog (S. cerevisiae) [Homo sapiens]
614.0 [0..1] [535..20]

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Predicted Domain #1
Region A:
Residues: [1-184]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASVAFKS REDHRKQIEL EEARKAGLAP AEVDEDGKEI NPHIPQYMSS APWYLNSEKP  60
   61 SLKHQRKWKS DPNYTKSWYD RGAKIFQAEK YRKGACQNCG AMTHTAKACM DRPRKIGAKY 120
  121 TNMNIAPDEK IESFELDYDG KRDRWNGYDP STYHRVIDLY EAKEDARKKY LKEQQLKKLE 180
  181 EKNN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [185-309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEKGDDANSD GEEDEDDLRV DEAKVDESRQ MDFAKVEKRV RTTGGGSTGT VRNLRIREDT  60
   61 AKYLLNLDVN SAHYDPKTRS MREDPLPDAD PNDKFYLGDN QYRNSGQALE FKQLNIHSWE 120
  121 AFDKG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [310-535]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDMHMQAAPS QAELLYKSFQ VAKEKLKSQT KDTIMDKYGN AATEDEIPME LLLGQSERQV  60
   61 EYDRAGRIIK GQEVILPKSK YEEDVHANNH TSVWGSYWKD HQWGYKCCQQ IIRNSYCTGS 120
  121 AGIEAAEAAL DLMKANIARK EATEESPKKV EEKRMASWGT DIPEDLELNE EALANALKKE 180
  181 DLSRREEKDE RKRKYNVKYN NDVTPEEMEA YRMKRVHHED PMKDFL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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