| Protein: | HDG2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 721 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDG2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
914.0 | [0..11] | [721..1] |
|
Region A: Residues: [1-129] |
1 11 21 31 41 51
| | | | | |
1 MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL 60
61 HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE LNLEPLQVKF WFQNKRTQMK 120
121 NHHERHENS
|
| Detection Method: |  |
| Confidence: | 19.045757 |
| Match: | 1fjlA |
| Description: | Paired protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.334577365229545 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0696342306231097 | bayes_pls_golite062009 |
|
Region A: Residues: [130-216] |
1 11 21 31 41 51
| | | | | |
1 HLRAENEKLR NDNLRYREAL ANASCPNCGG PTAIGEMSFD EHQLRLENAR LREEIDRISA 60
61 IAAKYVGKPV SNYPLMSPPP LPPRPLE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [217-476] |
1 11 21 31 41 51
| | | | | |
1 LAMGNIGGEA YGNNPNDLLK SITAPTESDK PVIIDLSVAA MEELMRMVQV DEPLWKSLVL 60
61 DEEEYARTFP RGIGPRPAGY RSEASRESAV VIMNHVNIVE ILMDVNQWST IFAGMVSRAM 120
121 TLAVLSTGVA GNYNGALQVM SAEFQVPSPL VPTRETYFAR YCKQQGDGSW AVVDISLDSL 180
181 QPNPPARCRR RASGCLIQEL PNGYSKVTWV EHVEVDDRGV HNLYKHMVST GHAFGAKRWV 240
241 AILDRQCERL ASVMATNISS
|
| Detection Method: | |
| Confidence: | 2.71 |
| Match: | 2r55A |
| Description: | No description for 2r55A was found. |
|
Region A: Residues: [477-606] |
1 11 21 31 41 51
| | | | | |
1 GEVGVITNQE GRRSMLKLAE RMVISFCAGV SASTAHTWTT LSGTGAEDVR VMTRKSVDDP 60
61 GRPPGIVLSA ATSFWIPVPP KRVFDFLRDE NSRNEWDILS NGGVVQEMAH IANGRDTGNC 120
121 VSLLRVNSAN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.351 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.242 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.237 | c.53.1 | Resolvase-like |
| View | Download | 0.236 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.232 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
|
Region A: Residues: [607-721] |
1 11 21 31 41 51
| | | | | |
1 SSQSNMLILQ ESCTDPTASF VIYAPVDIVA MNIVLNGGDP DYVALLPSGF AILPDGNANS 60
61 GAPGGDGGSL LTVAFQILVD SVPTAKLSLG SVATVNNLIA CTVERIKASM SCETA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.546 | N/A | N/A | c.16.1 | Lumazine synthase |
| View | Download | 0.460 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.459 | N/A | N/A | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.447 | N/A | N/A | c.16.1 | Lumazine synthase |
| View | Download | 0.446 | N/A | N/A | a.1.1 | Globin-like |
