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View Structure Prediction Details

Protein: gi|79383745, gi|...
Organism: Arabidopsis thaliana
Length: 855 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|79383745, gi|....

Description E-value Query
Range
Subject
Range
gi|115451109, gi... - gi|115451109|ref|NP_001049155.1| Os03g0179000 [Oryza sativa (japonica cultivar-group)], gi|113547626...
733.0 [0..2] [855..10]
gi|25406510, gi|... - pir||A96805 hypothetical protein T5M16.14 [imported] - Arabidopsis thaliana, gi|12323382|gb|AAG5166...
730.0 [0..1] [855..1]
gi|118374028 - gi|118374028|ref|XP_001020206.1| Tubulin-tyrosine ligase family protein [Tetrahymena thermophila]
gi|118374028, gi... - gi|89301973|gb|EAR99961.1| Tubulin-tyrosine ligase family protein [Tetrahymena thermophila SB210], g...
502.0 [0..5] [851..12]
gi|168274414 - gi|168274414|dbj|BAG09627.1| tubulin--tyrosine ligase-like protein 12 [synthetic construct]
TTLL12 - tubulin tyrosine ligase-like family, member 12
452.0 [0..243] [855..7]
gi|114686798 - gi|114686798|ref|XP_001171890.1| PREDICTED: tubulin tyrosine ligase-like family, member 12 isoform 1...
452.0 [0..243] [855..7]

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Predicted Domain #1
Region A:
Residues: [1-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIESFDDF VKVHGILLAA SGLPPKLYPR LFEKLAYDTF DGGDYFQIES CEDDQRRKLL  60
   61 LTAESMPKDS DVFLVDHAWT FRLPDAYKQL KEIPGLAERM ASLMSVDIDV DAGEEEVAEE 120
  121 LSVDQIIDNE IRYAADKGYD SLRWLELEGL GVDDSLLSLH LPSKFQDLVA LSLIGNKIES 180
  181 ADVVIQEIVK FKNLKALWLN DNPVLQKSER QMADEILQGC PSLEIYNSCF TPNYGLW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [238-449]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALGFCGDIFG KDNPGCVQQD QPLCNVTSLD LSNRSIHNLV NKAFSVHEMP LLSHLNIRGN  60
   61 SLDQNSVGEL LEVLKLFPSL SSLEVDIPGP LGINALEILE SLSNLSLLNG VDTAKILETG 120
  121 KHVVDSMLQP RIPELNPDDT LVDRVLDAMW LYALNYRLAD DEKLDETSLW YVMDELGSAL 180
  181 RHSDEPNFKV APFLFMPSGK LESAVSYSVM WP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [450-607]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IKHSQKGDEC TRDFLSGIGE DKQRSARLTA WFQTPENYFI HEFEKYQQKL QAKAFESKPS  60
   61 NPSVSRSIQH SDGSPLLVYT DLPQVEEFLT RPEFVITNEP KDADILWTSV QVDDELKKEV 120
  121 GITDDQYINQ FPFEACLVMK HHLAETIQMG YGSPKWLQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [608-780]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTYNLETQLS QFIGDYCVRK RDQLNNLWIL KPWNMARTID TSITDNLSAI IRMMETGPKI  60
   61 CQKYIEHPAL FKGNKFDLRY VVLVRSIDPL EIYLIEIFWV RLSNNPYSLE KHSFFEYETH 120
  121 FTVMNYGRKL NHKPTAEFVR EFEQEHNVKW MDIHEKVKQV IRAVFEAAAL AHP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [781-855]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EMQSPKSRAM YGVDVMLDSS FEPKILEVTY CPDCMRACKY DMETIDGKGI VKGGDFFNNV  60
   61 FGCLFLDETA HVTPL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle