| Protein: | GMK3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 282 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GMK3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
248.0 | [0..2] | [279..305] |
|
Region A: Residues: [1-75] |
1 11 21 31 41 51
| | | | | |
1 MIRKLCSSFS RSIIFPNKPI FIPRSFPQPL RHSSALSYSS LKMTDTHIPG NPNSSPIQSP 60
61 TKPESLRSLE FQLGS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.526 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.423 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.358 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.355 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.352 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [76-282] |
1 11 21 31 41 51
| | | | | |
1 SFTADPIIPP PNQIVIVISG PSGVGKDAVI NKLREVREGL HFVVTATSRP MRPGEVDGKD 60
61 YFFVSRDQFL SMVENEELLE YALVYGEYKG IPKKQIQEFM AKGEDIVLRV DIQGAQTLRR 120
121 ILGNSAVFIF LVAESELAMV ERLIDRKTES QEELLVRVAT AREEVRHLKN FDYVVVNAKG 180
181 RLDDAVNRVE SIIDAEKSKV HQRIVRI
|
| Detection Method: | |
| Confidence: | 33.69897 |
| Match: | 1s96A |
| Description: | The 2.0 A X-ray structure of Guanylate Kinase from E.coli |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleobase, nucleoside, nucleotide kinase activity | 3.66392587433723 | bayes_pls_golite062009 |
| hydrogen ion transporting ATP synthase activity, rotational mechanism | 3.47528445676761 | bayes_pls_golite062009 |
| hydrogen ion transmembrane transporter activity | 2.55741461337855 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.54103332067513 | bayes_pls_golite062009 |
| monovalent inorganic cation transmembrane transporter activity | 2.40650518173039 | bayes_pls_golite062009 |
| nucleotide kinase activity | 2.24094813695083 | bayes_pls_golite062009 |
| kinase activity | 2.0779386406753 | bayes_pls_golite062009 |
| phosphotransferase activity, phosphate group as acceptor | 1.96697952975573 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 1.92480060698169 | bayes_pls_golite062009 |
| binding | 1.89648142312455 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 1.69194088788064 | bayes_pls_golite062009 |
| inorganic cation transmembrane transporter activity | 1.60317778681063 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 1.48327844851166 | bayes_pls_golite062009 |
| nucleic acid binding | 1.08697924060619 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| nucleotide binding | 0.828524126097217 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.810407092593521 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.810379637652019 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.805605269661092 | bayes_pls_golite062009 |
| DNA binding | 0.702147676354075 | bayes_pls_golite062009 |
| adenylate kinase activity | 0.447752711852745 | bayes_pls_golite062009 |
| hydrolase activity | 0.420858111948277 | bayes_pls_golite062009 |
| transcription regulator activity | 0.287777990975748 | bayes_pls_golite062009 |
| helicase activity | 0.0775311459068899 | bayes_pls_golite062009 |
