| Protein: | gi|187252543 |
| Organism: | synthetic construct |
| Length: | 754 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|187252543.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [10..745] | [2171..2882] |
|
|
0.0 | [95..753] | [576..1235] |
|
|
0.0 | [10..752] | [205..963] |
|
Region A: Residues: [1-202] |
1 11 21 31 41 51
| | | | | |
1 MTTAGRGNLG LIPRSTAFQK QEGRLTVKQE PANQTWGQGS SLQKNYPPVC EIFRLHFRQL 60
61 CYHEMSGPQE ALSRLRELCR WWLMPEVHTK EQILELLVLE QFLSILPGEL RTWVQLHHPE 120
121 SGEEAVAVVE DFQRHLSGSE EVSAPAQKQE MHFEETTALG TTKESPPTSP LSGGSAPGAH 180
181 LEPPYDPGTH HLPSGDFAQC TS
|
| Detection Method: |  |
| Confidence: | 4.07 |
| Match: | 2fi2A |
| Description: | Solution structure of the SCAN homodimer from MZF-1/ZNF42 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.97572076253445 | bayes_pls_golite062009 |
| DNA binding | 3.38941894783956 | bayes_pls_golite062009 |
| nucleic acid binding | 3.3197625917842 | bayes_pls_golite062009 |
| transcription factor activity | 2.69648667931275 | bayes_pls_golite062009 |
| transcription activator activity | 2.64323093360221 | bayes_pls_golite062009 |
| binding | 2.59742365390538 | bayes_pls_golite062009 |
| transcription repressor activity | 2.1174449104536 | bayes_pls_golite062009 |
| protein binding | 1.91815434972195 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.797371870302703 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.101314838383672 | bayes_pls_golite062009 |
|
Region A: Residues: [203-276] |
1 11 21 31 41 51
| | | | | |
1 PVPTLPQVGN SGDQAGATVL RMVRPQDTVA YEDLSVDYTQ KKWKSLTLSQ RALQWNMMPE 60
61 NHHSMASLAG ENMM
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [277-493] |
1 11 21 31 41 51
| | | | | |
1 KGSELTPKQE FFKGSESSNR TSGGLFGVVP GAAETGDVCE DTFKELEGQT SDEEGSRLEN 60
61 DFLEITDEDK KKSTKDRYDK YKEVGEHPPL SSSPVEHEGV LKGQKSYRCD ECGKAFNRSS 120
121 HLIGHQRIHT GEKPYECNEC GKTFRQTSQL IVHLRTHTGE KPYECSECGK AYRHSSHLIQ 180
181 HQRLHNGEKP YKCNECAKAF TQSSRLTDHQ RTHTGEK
|
| Detection Method: | |
| Confidence: | 7.9 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [494-676] |
1 11 21 31 41 51
| | | | | |
1 PYECNECGEA FIRSKSLARH QVLHTGKKPY KCNECGRAFC SNRNLIDHQR IHTGEKPYEC 60
61 SECGKAFSRS KCLIRHQSLH TGEKPYKCSE CGKAFNQNSQ LIEHERIHTG EKPFECSECG 120
121 KAFGLSKCLI RHQRLHTGEK PYKCNECGKS FNQNSHLIIH QRIHTGEKPY ECNECGKVFS 180
181 YSS
|
| Detection Method: | |
| Confidence: | 40.30103 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [677-754] |
1 11 21 31 41 51
| | | | | |
1 SLMVHQRTHT GEKPYKCNDC GKAFSDSSQL IVHQRVHTGE KPYECSECGK AFSQRSTFNH 60
61 HQRTHTGEKS SGLAWSVS
|
| Detection Method: | |
| Confidence: | 6.0 |
| Match: | 1f2iG |
| Description: | ZIF268 |
Matching Structure (courtesy of the PDB): |
|
