YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|172081533, gi...
Organism:	Bacillus anthracis str. A0174
Length:	607 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|172081533, gi....

Description	E-value	Query Range	Subject Range
LEPA_GEOKA - Elongation factor 4 OS=Geobacillus kaustophilus GN=lepA PE=3 SV=1 LEPA_GEOKA - Elongation factor 4 OS=Geobacillus kaustophilus (strain HTA426) GN=lepA PE=3 SV=1	0.0	[1..606]	[1..606]
LEPA_BACHD - Elongation factor 4 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 /... LEPA_BACHD - Elongation factor 4 OS=Bacillus halodurans GN=lepA PE=3 SV=1	0.0	[1..606]	[1..606]
gi\|229157933, gi... - gi\|229157933\|ref\|ZP_04286006.1\| GTP-binding protein lepA [Bacillus cereus ATCC 4342], gi\|228625541\|g... gi\|228987570, gi... - gi\|228987570\|ref\|ZP_04147688.1\| GTP-binding protein lepA [Bacillus thuringiensis serovar tochigiensi... gi\|47553986, gi\|... - gi\|47569315\|ref\|ZP_00239999.1\| GTP-binding protein LepA [Bacillus cereus G9241], gi\|47553986\|gb\|EAL1...	0.0	[1..607]	[1..607]
gi\|30264390, gi\|... - gi\|30264390\|ref\|NP_846767.1\| GTP-binding protein LepA [Bacillus anthracis str. Ames], gi\|30259048\|gb... gi\|65321692, gi\|... - gi\|65321692\|ref\|ZP_00394651.1\| COG0481: Membrane GTPase LepA [Bacillus anthracis str. A2012], ref\|NP... gi\|47504989, gi\|... - gi\|47529841\|ref\|YP_021190.1\| GTP-binding protein LepA [Bacillus anthracis str. 'Ames Ancestor'], gi\|... LEPA_BACAN - Elongation factor 4 OS=Bacillus anthracis GN=lepA PE=3 SV=1 LEPA_BACAA - Elongation factor 4 OS=Bacillus anthracis (strain A0248) GN=lepA PE=3 SV=1	0.0	[1..607]	[1..607]
LEPA_BACC1 - Elongation factor 4 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=lepA PE=3 SV=1 gi\|229198447, gi... - gi\|229198447\|ref\|ZP_04325151.1\| GTP-binding protein lepA [Bacillus cereus m1293], gi\|228584950\|gb\|EE...	0.0	[1..607]	[1..607]
LEPA_BACCR - Elongation factor 4 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9...	0.0	[1..607]	[1..607]
LEPA_BACAH - Elongation factor 4 OS=Bacillus thuringiensis (strain Al Hakam) GN=lepA PE=3 SV=1 gi\|228596818, gi... - gi\|229186559\|ref\|ZP_04313720.1\| GTP-binding protein lepA [Bacillus cereus BGSC 6E1], gi\|228596818\|gb... gi\|196024413, gi... - gi\|196044925\|ref\|ZP_03112159.1\| GTP-binding protein LepA [Bacillus cereus 03BB108], gi\|196024413\|gb\|... LEPA_BACCZ - Elongation factor 4 OS=Bacillus cereus (strain ZK / E33L) GN=lepA PE=3 SV=1 LEPA_BACHK - Elongation factor 4 OS=Bacillus thuringiensis subsp. konkukian GN=lepA PE=3 SV=1 LEPA_BACC3 - Elongation factor 4 OS=Bacillus cereus (strain 03BB102) GN=lepA PE=3 SV=1 gi\|196039360, gi... - gi\|196039360\|ref\|ZP_03106666.1\| GTP-binding protein LepA [Bacillus cereus NVH0597-99], gi\|196029987\|... LEPA_BACHK - Elongation factor 4 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=lepA PE=3 SV=1	0.0	[1..607]	[1..607]
gi\|153196258, gi... - gi\|254829762\|ref\|ZP_05234417.1\| GTP-binding protein LepA [Listeria monocytogenes 10403S], gi\|1531962... gi\|126943486, gi... - gi\|254898355\|ref\|ZP_05258279.1\| GTP-binding protein LepA [Listeria monocytogenes J0161], gi\|15318383... gi\|153179529, gi... - gi\|254936481\|ref\|ZP_05268178.1\| GTP-binding protein LepA [Listeria monocytogenes F6900], gi\|15317952... gi\|153190922, gi... - gi\|254912153\|ref\|ZP_05262165.1\| GTP-binding protein LepA [Listeria monocytogenes J2818], gi\|15319092... gi\|47095432, gi\|... - gi\|47095432\|ref\|ZP_00233042.1\| GTP-binding protein LepA [Listeria monocytogenes str. 1/2a F6854], gi...	0.0	[1..607]	[1..607]
LEPA_LISMO - Elongation factor 4 OS=Listeria monocytogenes GN=lepA PE=3 SV=1 LEPA_LISMC - GTP-binding protein lepA OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=lepA PE=3 SV=1 gi\|254824462 - gi\|254824462\|ref\|ZP_05229463.1\| GTP-binding protein LepA [Listeria monocytogenes FSL J1-194] LEPA_LISMH - Elongation factor 4 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=lepA PE=3 SV=1 gi\|254852103 - gi\|254852103\|ref\|ZP_05241451.1\| GTP-binding protein LepA [Listeria monocytogenes FSL R2-503] gi\|254873346 - gi\|254873346\|ref\|ZP_05246056.1\| GTP-binding protein LepA [Listeria monocytogenes FSL N1-017] gi\|224501581 - gi\|224501581\|ref\|ZP_03669888.1\| GTP-binding protein LepA [Listeria monocytogenes FSL R2-561] gi\|254879032 - gi\|254879032\|ref\|ZP_05251742.1\| GTP-binding protein LepA [Listeria monocytogenes FSL J2-071] gi\|224500502 - gi\|224500502\|ref\|ZP_03668851.1\| GTP-binding protein LepA [Listeria monocytogenes Finland 1988] LEPA_LISMC - Elongation factor 4 OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=lepA PE=3 SV=1 LEPA_LISMF - Elongation factor 4 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=lepA PE=3 SV=1 gi\|254827767, gi... - gi\|254827767\|ref\|ZP_05232454.1\| GTP-binding protein LepA [Listeria monocytogenes FSL N3-165], gi\|153... LEPA_LISMO - Elongation factor 4 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=lepA PE=... gi\|153202407, gi... - gi\|254931414\|ref\|ZP_05264773.1\| GTP-binding protein LepA [Listeria monocytogenes HPB2262], gi\|153202... gi\|47017523, gi\|... - gi\|47094093\|ref\|ZP_00231818.1\| GTP-binding protein LepA [Listeria monocytogenes str. 4b H7858], gi\|4...	0.0	[1..607]	[1..607]
LEPA_BACSK - Elongation factor 4 OS=Bacillus clausii (strain KSM-K16) GN=lepA PE=3 SV=1	0.0	[1..606]	[1..606]

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Predicted Domain #1

Region A:
Residues: [1-528]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKEERAKRQ SKIRNFSIIA HIDHGKSTLA DRILEKTNAL TQREMKAQLL DSMDLERERG  60
   61 ITIKLNAVQL NYKAKDGEEY ILHLIDTPGH VDFTYEVSRS LAACEGAILV VDAAQGIEAQ 120
  121 TLANVYLALD NNLEILPVIN KIDLPSADPE RVRQEVEDVI GLDASEAVLA SAKAGIGIEE 180
  181 ILEQIVEKVP APTGDSEEPL QCMIFDSLYD PYRGVIAYIR VVNGTVKVGD KVRMMATGKE 240
  241 FEVTEVGVFT PKTTQRDELT VGDVGFLAAS IKNVGDTRVG DTITHAKRPA AEPLAGYRKL 300
  301 NPMVFCGLYP IDSARYNDLR DALEKLELND SALEFEPETS QALGFGFRCG FLGLLHMEIL 360
  361 QERIEREFKI DLITTAPSVI YKVFLTNGED MIVDNPSNMP DPQTIDRVEE PFVKAAIMVP 420
  421 NDYVGAVMEI CQGKRGTFID MQYLDETRVT LTYEIPLSEI VYDFFDQLKS NTKGYASFDY 480
  481 ELIGYKPSKL VKMDILLNSE QVDALSFIVH RDSAYDRGKV IVEKLKEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.39794
Match:	1fnmA
Description:	Elongation factor G (EF-G), domain II; Elongation factor G (EF-G), N-terminal (G) domain; Elongation factor G (EF-G), domain IV; Elongation factor G (EF-G)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [529-607]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPRQQFEVPI QATIGNKVVA RSTIKAMRKN VLAKCYGGDI SRKRKLLDKQ KEGKKRMKSV  60
   61 GSVEVPQEAF MAVLKMDDN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	49.744727
Match:	PF06421.3
Description:	No description for PF06421.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.728	N/A	N/A	a.112.1	Description not found.
View	Download	0.704	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.629	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.518	N/A	N/A	a.112.1	Description not found.
View	Download	0.513	N/A	N/A	a.64.1	Saposin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits