YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16974933, gi\|...
Organism:	Escherichia coli
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16974933, gi|....

Description	E-value	Query Range	Subject Range
gi\|89051696, gi\|... - gi\|89072592\|ref\|ZP_01159164.1\| deoxyribose-phosphate aldolase [Photobacterium sp. SKA34], gi\|8905169...	232.0	[0..2]	[260..1]
gi\|90581531, gi\|... - gi\|90581531\|ref\|ZP_01237324.1\| deoxyribose-phosphate aldolase [Vibrio angustum S14], gi\|90437293\|gb\|...	232.0	[0..2]	[260..1]
DEOC_PYRKO - Probable deoxyribose-phosphate aldolase OS=Pyrococcus kodakaraensis GN=deoC PE=3 SV=1 DEOC_THEKO - Deoxyribose-phosphate aldolase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)...	229.0	[0..7]	[237..1]
gi\|90326540, gi\|... - gi\|90412503\|ref\|ZP_01220506.1\| deoxyribose-phosphate aldolase [Photobacterium profundum 3TCK], gi\|90...	228.0	[0..2]	[260..1]
DEOC_PHOPR - Deoxyribose-phosphate aldolase OS=Photobacterium profundum (strain SS9) GN=deoC PE=3 SV=1 DEOC_PHOPR - Deoxyribose-phosphate aldolase OS=Photobacterium profundum GN=deoC PE=3 SV=1	226.0	[0..2]	[260..1]
gi\|16974931, gi\|... - gi\|16974932\|pdb\|1JCJ\|B Chain B, Observation Of Covalent Intermediates In An Enzyme Mechanism At Atom...	225.0	[0..1]	[260..1]
DEOC2_VIBVY - Deoxyribose-phosphate aldolase 2 OS=Vibrio vulnificus (strain YJ016) GN=deoC2 PE=3 SV=1	225.0	[0..2]	[259..1]
gi\|26111704, gi\|... - gi\|26251271\|ref\|NP_757311.1\| deoxyribose-phosphate aldolase [Escherichia coli CFT073], gi\|26111704\|g...	224.0	[0..2]	[260..9]
gi\|56130598, gi\|... - gi\|56416341\|ref\|YP_153416.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica ser... gi\|62130618, gi\|... - gi\|62182985\|ref\|YP_219402.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica ser... gi\|205275067, gi... - gi\|205355286\|ref\|YP_002229087.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica... gi\|206711495, gi... - gi\|207859692\|ref\|YP_002246343.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica... gi\|197365263, gi... - gi\|197365263\|ref\|YP_002144900.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica... lcl\|NC_016856.1_... - [gene=deoC] [protein=deoxyribose-phosphate aldolase] [protein_id=YP_005240911.1] [location=4834246..... gi\|16767808, gi\|... - gi\|16767808\|ref\|NP_463423.1\| deoxyribose-phosphate aldolase [Salmonella typhimurium LT2], gi\|1642313... gi\|238910726 - gi\|238910726\|ref\|ZP_04654563.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica ...	224.0	[0..2]	[260..7]
gi\|29144840, gi\|... - gi\|29144840\|ref\|NP_808182.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica ser... gi\|213616442 - gi\|213616442\|ref\|ZP_03372268.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica ... gi\|16505671, gi\|... - gi\|25291063\|pir\|\|AC1073 deoxyribose-phosphate aldolase (EC 4.1.2.4) [imported] - Salmonella enterica... gi\|214002583 - gi\|214002583\|ref\|ZP_03413318.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica ... gi\|16763362 - gi\|16763362\|ref\|NP_458979.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica ser... gi\|213025262 - gi\|213025262\|ref\|ZP_03339709.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica ... gi\|213051517 - gi\|213051517\|ref\|ZP_03344395.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica ... gi\|213427572 - gi\|213427572\|ref\|ZP_03360322.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica ... gi\|213584182 - gi\|213584182\|ref\|ZP_03366008.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica ...	224.0	[0..2]	[260..7]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HMTDLKASSL RALKLMDLTT LNDDDTDEKV IALCHQAKTP VGNTAAICIY PRFIPIARKT  60
   61 LKEQGTPEIR IATVTNFPHG NDDIDIALAE TRAAIAYGAD EVDVVFPYRA LMAGNEQVGF 120
  121 DLVKACKEAC AAANVLLKVI IETGELKDEA LIRKASEISI KAGADFIKTS TGKVAVNATP 180
  181 ESARIMMEVI RDMGVEKTVG FKPAGGVRTA EDAQKYLAIA DELFGADWAD ARHYRFGASS 240
  241 LLASLLKALG HGDGKSASSY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.522879
Match:	1jclA
Description:	Deoxyribose-phosphate aldolase DeoC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.67031204377352	bayes_pls_golite062009
deoxyribose-phosphate aldolase activity	2.42732299324236	bayes_pls_golite062009
kinase activity	1.94076427145239	bayes_pls_golite062009
fructose-bisphosphate aldolase activity	1.57588823292155	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	1.53236719840557	bayes_pls_golite062009
transaldolase activity	1.20024248197006	bayes_pls_golite062009
transferase activity	0.464721888799972	bayes_pls_golite062009
aldehyde-lyase activity	0.351872954170322	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: