YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254178171, gi...
Organism:	Burkholderia mallei ATCC 10399
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254178171, gi....

Description	E-value	Query Range	Subject Range
ATE_BURPS - Putative arginyl-tRNA--protein transferase OS=Burkholderia pseudomallei GN=ate PE=3 SV=1 ATE_BURPS - Putative arginyl-tRNA--protein transferase OS=Burkholderia pseudomallei (strain K96243) GN=ate PE=3 ... gi\|254297761, gi... - gi\|254297761\|ref\|ZP_04965214.1\| putative arginine-tRNA-protein transferase [Burkholderia pseudomalle... gi\|194506448, gi... - gi\|254179929\|ref\|ZP_04886528.1\| putative arginine-tRNA-protein transferase [Burkholderia pseudomalle... gi\|237812105, gi... - gi\|237812105\|ref\|YP_002896556.1\| arginyltransferase [Burkholderia pseudomallei MSHR346], gi\|23750565... gi\|167738746 - gi\|167738746\|ref\|ZP_02411520.1\| arginyl-tRNA-protein transferase [Burkholderia pseudomallei 14] gi\|167911099 - gi\|167911099\|ref\|ZP_02498190.1\| arginyl-tRNA-protein transferase [Burkholderia pseudomallei 112] gi\|167815970 - gi\|167815970\|ref\|ZP_02447650.1\| arginyl-tRNA-protein transferase [Burkholderia pseudomallei 91]	431.0	[0..1]	[276..1]

Back

Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHPTELPLS PLSALQFYAT APYPCSYLDG RVARSQVATP SHLINSDIYT ELVKAGFRRS  60
   61 GVFTYRPYCD GCRACVPVRV PVDAFAP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	12.853872
Match:	PF04376.4
Description:	No description for PF04376.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRTQRRTWKR HRALVATVAA LHYDEEHYAL YMRYQSARHA GGGMDRDSRD QYEQFLLQSR  60
   61 INSRLVEFRD LDPAENGAST LRMVSMIDIL GDGLSSVYTF FDPDESHASY GTYNILWQIE 120
  121 QAKSLRLPYV YLGYWIRESP KMAYKANFHP LEGLVDGRWK VLDPTLADLP PVDAALARAP 180
  181 LPGGHSGTR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.17
Match:	1ne9A
Description:	Crystal Structure of Weissella viridescens FemX at 1.7 Ang Resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity	2.55875279009494	bayes_pls_golite062009
catalytic activity	1.823104805379	bayes_pls_golite062009
N-acyltransferase activity	1.01612175108957	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.891365267309195	bayes_pls_golite062009
N-acetyltransferase activity	0.742763631251083	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	0.702304130974859	bayes_pls_golite062009
acyltransferase activity	0.692187306039071	bayes_pls_golite062009
histone acetyltransferase activity	0.306849355414592	bayes_pls_golite062009
lysine N-acetyltransferase activity	0.306849355414592	bayes_pls_golite062009
acetyltransferase activity	0.260019561204287	bayes_pls_golite062009
hydrolase activity	0.170204792281041	bayes_pls_golite062009
peptidase activity	0.0747105464856999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: