YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|172080126, gi...
Organism:	Bacillus anthracis str. A0174
Length:	310 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|172080126, gi....

Description	E-value	Query Range	Subject Range
gi\|89207438, gi\|... - gi\|89207438\|ref\|ZP_01185979.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus weihenstephanensis KBAB4...	1.0E-53	[1..309]	[1..310]
gi\|75758399, gi\|... - gi\|75758399\|ref\|ZP_00738522.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar is...	2.0E-40	[1..305]	[3..321]
gi\|18144265, gi\|... - gi\|18309588\|ref\|NP_561522.1\| enterotoxin [Clostridium perfringens str. 13], gi\|18144265\|dbj\|BAB80312...	2.0E-39	[1..310]	[71..394]
gi\|47558560, gi\|... - gi\|47564408\|ref\|ZP_00235453.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus G9241], gi\|475585...	3.0E-39	[1..252]	[154..421]
gi\|42782348, gi\|... - gi\|42782348\|ref\|NP_979595.1\| S-layer protein, putative [Bacillus cereus ATCC 10987], gi\|42738273\|gb\|...	3.0E-39	[1..252]	[154..421]
gi\|110800117, gi... - gi\|110800117\|ref\|YP_695040.1\| N-acetylmuramoyl-L-alanine amidase [Clostridium perfringens ATCC 13124...	2.0E-38	[1..310]	[71..394]
gi\|52142261, gi\|... - gi\|52142261\|ref\|YP_084569.1\| N-acetylmuramoyl-L-alanine amidase and S-layer protein fusion [Bacillus...	2.0E-38	[2..252]	[155..421]
gi\|228934545, gi... - gi\|228934545\|ref\|ZP_04097380.1\| N-acetylmuramoyl-L-alanine amidase / S-layer protein [Bacillus thuri... gi\|49479019, gi\|... - gi\|49479019\|ref\|YP_037356.1\| N-acetylmuramoyl-L-alanine amidase and S-layer protein fusion [Bacillus...	3.0E-38	[2..252]	[155..421]
gi\|228956352, gi... - gi\|228956352\|ref\|ZP_04118187.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar k... gi\|117553201 - gi\|117553201\|gb\|ABK35129.1\| putative N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis sero... gi\|27436099 - gi\|27436099\|gb\|AAO13301.1\|AF358861_1 unknown [Bacillus thuringiensis]	1.0E-37	[2..288]	[13..292]

Back

Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIRKKLVDP SKYCIKCPYT MNPEFITVHN TYNDATAENE VAYMIRNDNQ VSFHIAVDDK  60
   61 EAVQGIPLER NAWHTGDGNG NGNRKSIGVE ICYSLSGGDR YYKAEDNAAI VVAQLMKQYN 120
  121 IPIKKVRTHQ SWSGKYCPHR MLAEGRWNNF IERVQNAYNG DGKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1yb0A
Description:	Structure of PlyL
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
N-acetylmuramoyl-L-alanine amidase activity	5.24309205254681	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	3.80195358174059	bayes_pls_golite062009
catalytic activity	0.998996028203371	bayes_pls_golite062009
hydrolase activity	0.83639977289922	bayes_pls_golite062009
binding	0.528043510871228	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.0631264776586918	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [165-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPTLIPPSTN GTGIAYIEGN GINLRKGLGT GYGVIRQLGK GESYEVWGQS NGWLNLGGNQ  60
   61 WIYNDSSYIR YTGESTPTSS QSVNNGVGIV TITADVLRVR KGPGTNYDIV KNVYQGEQYQ 120
  121 SWGYRDGWYN VGGDQWVSGE YVKFED

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.71
Match:	1ng2A
Description:	p47pox (neutrophil cytosolic factor 1)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: